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Search results for atom editor pdb
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Rmsd
⭐
438
Calculate Root-mean-square deviation (RMSD) of two molecules, using rotation, in xyz or pdb format
Freesasa
⭐
95
C-library for calculating Solvent Accessible Surface Areas
Atomium
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92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Pdbtools
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68
A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
Pdbtbx
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33
A library to open/edit/save (crystallographic) Protein Data Bank (PDB) and mmCIF files in Rust.
Pmx
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33
Toolkit for free-energy calculation setup/analysis and biomolecular structure handling
Pdb Benchmarks
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26
Benchmarking common tasks on proteins in various languages and packages
Onionnet
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24
A multiple-layer inter-molecular contact features based deep neural network for protein-ligand binding affinity prediction
Pdbcolor
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24
Python code to color a PDB structure based on parameters from a multiple sequence alignment
Chem.cr
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22
Library for dealing with computational chemistry files
Pdb2sql
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16
Fast and versatile biomolecular structure PDB file parser using SQL queries
Prosettac
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14
Gopy
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13
Bioptools
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12
Tools making use of BiopLib
Tacoxdna
⭐
11
A collection of tools for DNA modelling
Ofxmol
⭐
8
Parser, data structure and mesh generators for biological macromolecules.
Ponder
⭐
8
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
Structureanalyzer
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6
A program analyzing 3D protein structures from PDB to generate 2D binding motifs
Pdb2entropy
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5
Entropy from PDB conformational ensembles
Libzdock
⭐
5
ZDOCK predictions and PDB structures in C++ and Python
Pdbtools
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5
Collection of modules for PDB file parsing, linear algebra calculations and structure modify.
Ppiprediction
⭐
5
software used in the paper "Exploring the potential of 3D Zernike descriptors and SVM for protein–protein interface prediction"
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