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Mdanalysis ⭐ 1,154

MDAnalysis is a Python library to analyze molecular dynamics simulations.

Moltemplate ⭐ 186

A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies

A package for atom-typing as well as applying and disseminating forcefields

a python package for the interfacial analysis of molecular simulations

Unsupervised learning of atomic scale dynamics from molecular dynamics.

Atoms In Molecules Neural Network Potential

Gromacs Fda ⭐ 22

Force Distribution Analysis (FDA) for GROMACS

Playmol is a(nother) software for building molecular models

Lennardjones ⭐ 8

Lennard Jones Molecular Dynamics in C++

Modern Fortran toolkit for reading in and analyzing DCD simulation trajectories output from LAMMPS

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