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Search results for assembly vcf
assembly
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vcf
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15 search results found
Nanopolish
⭐
496
Signal-level algorithms for MinION data
Svaba
⭐
211
Structural variation and indel detection by local assembly
Vcf Validator
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125
Validation suite for Variant Call Format (VCF) files, implemented using C++11
Genomewarp
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96
GenomeWarp translates genetic variants from one genome assembly version to another.
Indelope
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39
find large indels (in the blind spot between GATK/freebayes and SV callers)
Dipcall
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38
Reference-based variant calling pipeline for a pair of phased haplotype assemblies
Novograph
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36
NovoGraph: building whole genome graphs from long-read-based de novo assemblies
Thesis
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28
my PhD thesis
Common_analyses
⭐
20
Repository of common bioinformatics scripts
Ekidna
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19
Assembly based core genome SNP alignments for bacteria
Sigprofilermatrixgeneratorr
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17
R wrapper for utilizing the SigProfilerMatrixGenerator framework
Aquila
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16
Diploid personal genome assembly and comprehensive variant detection based on linked-reads
Aquila_stlfr
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8
Human haplotype-resolved assembly and variant detection for stLFR, hybrid assembly for linked-reads
Script_collection
⭐
7
Collection of scripts to solve small bioinformatic challenges.
Varity
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5
Variant translation library for Clojure
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