Awesome Open Source

Programming Languages

Search results for assembly repeat

12 search results found

De novo assembler for single molecule sequencing reads using repeat graphs

FunGAP: fungal Genome Annotation Pipeline

Dnapipete ⭐ 38

dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not require genome assembly and works on small datasets (< 1X).

Assembly by Reduced Complexity (ARC)

Tandemtools ⭐ 21

Tool for assessing/improving assembly quality in extra-long tandem repeats

Te Search Tools ⭐ 11

Python wrappers for programs that search for transposable elements

Metacrispr ⭐ 9

Writing a lib in x86-64 assembly

Long Read Assembler Test Cases ⭐ 7

A small set of test cases for long-read assembly tools

Mrcanavar ⭐ 7

micro-read Copy Number Variant Regions finder

Repeat Aware ⭐ 6

Repeat Aware Performance Evaluation of Scaffolding Tools

Simple Circularise ⭐ 5

For a sequence or list of sequences, simple-circularise will circularise a linear sequence that should be circular but has been overlapped during assembly.

Related Searches

C Sharp Assembly (1,475)

Python Assembly (953)

C Assembly (920)

Video Game Assembly (772)

C Plus Plus Assembly (687)

Assembly Asm (535)

Assembly X86 (532)

Assembly Language (480)

Javascript Assembly (458)

Assembly Genome (447)

1-12 of 12 search results

Privacy | About | Terms | Follow Us On Twitter

Copyright 2018-2024 Awesome Open Source. All rights reserved.