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12 search results found

Find and visualize rearrangements in DNA sequences

♥ Efficient Estimation of Evolutionary Distances

Fast and accurate tool for estimating genomic distances between genome-skims

Geometricus ⭐ 22

A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.

A tool to infer metagenomic sample composition

Phylonium ⭐ 19

♥ Fast and Accurate Estimation of Evolutionary Distances

Meshclust2 ⭐ 11

MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences

Deep learning based alignment-free method for protein family modeling and prediction

Mapping-free software for fishing relevant reads in an RNA-Seq sample

Alignment-free simulation, computation, and visualization of Low-compexity regions in biological data

Castor_krfe ⭐ 9

Alignment-free method to identify and analyse discriminant genomic subsequences within pathogen sequences

genotyping by Mapping-free ALternate-allele detection of known VAriants

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