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Search results for algorithms bioinformatics
algorithms
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bioinformatics
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33 search results found
Cs Video Courses
⭐
62,887
List of Computer Science courses with video lectures.
Rust Bio
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1,428
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
P2rank
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193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
Cgranges
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144
A C/C++ library for fast interval overlap queries (with a "bedtools coverage" example)
Muscle
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134
Multiple sequence alignment with top benchmark scores scalable to thousands of sequences. Generates replicate alignments, enabling assessment of downstream analyses such as trees and predicted structures.
Block Aligner
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111
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
Cloops
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99
Accurate and flexible loops calling tool for 3D genomic data.
Bio
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97
Bioinformatics library for .NET
Nmf
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94
NMF: A Flexible R package for Nonnegative Matrix Factorization
Coursera Specializations
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68
Solutions to assignments of Coursera Specializations - Deep learning, Machine learning, Algorithms & Data Structures, Image Processing and Python For Everybody
Quantq
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61
The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.
Cute Nucleotides
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53
Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.
Cogaps
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53
Bayesian MCMC matrix factorization algorithm
Cath Tools
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51
Protein structure comparison tools such as SSAP and SNAP
Rust Lapper
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40
Rust implementation of a fast, easy, interval tree library nim-lapper
Agora
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37
Algorithm For Gene Order Reconstruction in Ancestors
Crystals
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36
Data structures, algorithms, and parsing for crystallography
Rna Playground
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34
Visualize the inner workings of RNA bioinformatics algorithms for structure prediction, interaction prediction and sequence alignment.
Directlfq
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27
Fast and accurate label-free quantification for small and very large numbers of proteomes
Scalabioalg
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25
Algorithms and tools for bioinformatics and life science informatics written in Scala
Til
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24
today I learned..
Nsga Ii
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23
an implementation of NSGA-II in java
Snpsea
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23
📊 Identify cell types and pathways affected by genetic risk loci.
Rosalind Solutions
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21
my solutions to problems from Rosalind.
Btllib
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19
Bioinformatics Technology Lab common code library
Metarna
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17
Find target sites for the miRNAs in genomic sequences
Gtfsort
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16
A chr/pos/feature GTF sorter that uses a lexicographically-based index ordering algorithm.
Vargeno
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15
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
Goldenrecord
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15
one aesthetic way to store musical notes into nucleic acid sequence
Bioinformatics Algorithms Coursera
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13
Solutions to Programming Assignments for Bioinformatics Algorithms (Part 1) on Coursera.org
Fast Simple Lcsk
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13
Fast and simple algorithms for computing both LCSk and LCSk+
Genefinder.jl
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12
A Gene Finder framework for Julia.
Csb
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12
A Python framework for structural bioinformatics.
Newick
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10
Manipulate and generate figures for trees in Newick format
Sigalign
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10
A Similarity-Guided Alignment Algorithm
Ssw_aligner
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10
Python implementation of Striped Smith-Waterman Algorithm
Trisicell
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9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
Plaac
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8
Prion-Like Amino Acid Composition
Aphylogeo
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7
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
Gdock
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6
Protein-Protein Docking using Genetic Algorithm
Rumi
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6
Rust UMI Directional Adjacency Deduplicator
Goetia
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6
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
Gotoh
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6
Short implementation (~500 lines) of the Gotoh algorithm, a.k.a. Needleman-Wunsch with affine gap penalties.
Bio Alignment
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5
Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences
Circrna_tools_comparison
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5
This repository contains the results and comparison visualization of circRNA candidates detected by circRNA prediction softwares.
Go Rosalind
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5
A Go (golang) package for solving bioinformatics problems.
Scphylo Tools
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5
a python toolkit for single-cell tumor phylogenetic analysis
Scalalabbioinf
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5
Bioinformatics using the ScalaLab environment
Bioinformatics_algorithms
⭐
5
Python code covering some of the algorithms underlying the following fundamental topics in bioinformatics: assembling genomes, comparing DNA and protein sequences, finding regulatory motifs, analyzing genome rearrangements, identifying proteins, and many other topics.
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1-33 of 33 search results
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