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325 search results found

Novosparc ⭐ 6

Reconstruction of spatial context of gene expression with optimal transport

Ontology Ui ⭐ 5

Ontology visualizer

This is a standalone interactive Shiny tool to analyze and explore single-cell RNA-seq data from human coronary artery.

Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)

Scistreer ⭐ 5

R/Rcpp implementation of the ScisTree algorithm

Vitessce Python Tutorial ⭐ 5

Notebooks for HuBMAP tutorial session (January 2023)

Scdrugprio ⭐ 5

Network analyses of single cell-based digital twins for personalized treatment of inflammatory disease

This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing reveals widespread personalized, context-specific gene expression regulation in immune cells” paper (https://www.biorxiv.org/content/10.1101/2021.06.0

R package to visualize colocalization for single cell & spatially-resolved genomics data

Classification of Single cells by Transfer Learning

Phd Thesis ⭐ 5

My PhD thesis - "Tools and techniques for single-cell RNA sequencing data"

R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

Scphylo Tools ⭐ 5

a python toolkit for single-cell tumor phylogenetic analysis

Scdeepsort_performance_comparison ⭐ 5

The source code and results for different methods on annotating external testing datsets of human and mouse.

Flowatlas.jl ⭐ 5

an interactive explorer for flow cytometry data

IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis

⚪ ➡️ 🔍 ℹ️ A suggested workflow, and accompanying scripts, to assemble Single Amplified Genomes (SAGs) from MDA derived Hi/MiSeq (Overlapped) Paired-End Illumina Libraries.

Singlecellnotes ⭐ 5

Links to interesting courses, tutorials, papers, software etc. related to single-cell omics data analysis

Probabilistic inference of single-cell bifurcations

Yet another single-cell analysis toolkit

Hgg Oncohistones ⭐ 5

Analysis for "K27M in canonical and noncanonical H3 variants occurs in distinct oligodendroglial cell lineages in brain midline gliomas" (Jessa et al, Nature Genetics, 2022)

Genocraft ⭐ 5

GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization

Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq data. scSTEM is a GUI based tool and thus does not require any coding experience.

Celltalkdb ⭐ 5

A manually curated database of literature-supported ligand-receptor interactions in human and mouse

Digitaldlsorter ⭐ 5

digitalDLSorteR: An R package to deconvolute bulk RNA-Seq using scRNA-Seq data

Related Searches

R Single Cell (121)

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