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Slurmjobs ⭐ 13

Automating Slurm job generation.

Instructions for using clusters at Virginia Tech

Spartanadvanced ⭐ 13

Advanced Linux commands, regular expressions, shell scripting, and their integration into SLURM scripts.

Clusterjob ⭐ 13

Manage traditional HPC cluster workflows in Python

Slurm Cheat Sheet ⭐ 12

Cheat sheet for interacting with the SLURM scheulder

Remote_ikernel ⭐ 12

Cluster IALAB. Documentación, scripts, archivos de configuración.

Puppet Jupyterhub ⭐ 12

Puppet module to deploy a JupyterHub that submits job to Slurm

Spark Slurm ⭐ 12

Tool for running/managing ad hoc spark clusters on a Slurm cluster

Phylotoast ⭐ 12

Tools for phylogenetic data analysis including visualization and cluster-computing support.

Mousemotionmapper ⭐ 12

Matlab pipeline for semi-supervised mouse behavioral classification

Slurmscale ⭐ 12

An external library for delivering Slurm Elastic Computing.

Slurm Stats ⭐ 11

Scripts for gathering SLURM statistics

Cwl Website ⭐ 11

www.commonwl.org

Autochem ⭐ 11

Automation of computational chemistry tasks using GAMESS, Orca, PSI4 and Gaussian. Gamess tasks emphasise the use of FMO calculations.

Slurm Charms ⭐ 11

Repository containing the slurm operator charms

Slurmwebapp ⭐ 11

Web application for SLURM cluster

Jobcomp Elasticsearch ⭐ 11

SLURM jobcomp plugin to index data into an elasticsearch server

Php Slurm ⭐ 11

This is PHP extensions goal is to provide just enough functionality to a web developer read data from the slurm controller daemon to create a *status* or *monitoring* application which can be viewed by the end user. All the code has been written by 'Vermeulen Peter' with contributions from TCHPC staff.

Rna Seq With Reference Genome And Annotation ⭐ 11

Sarchive ⭐ 11

Slurm job script archival

Constraining Dark Matter With Stellar Streams And Ml ⭐ 11

Probing the nature of dark matter by inferring the dark matter particle mass with machine learning and stellar streams.

Aws Parallelcluster Post Install Scripts ⭐ 11

Scripts to customize AWS ParallelCluster

Brainpipe ⭐ 11

Tensorflow_slurm_manager ⭐ 11

working on a cluster manager for TF

Hpc_r_workshop ⭐ 11

Gromacs Slurm Openmpi Vagrant ⭐ 11

An example 2-node cluster with a slurm controller for running gromacs

Container Education ⭐ 11

Introduction to Singularity containers and the Slurm job scheduler.

Job Maker ⭐ 11

a static web application for generating job submissions scripts for a SLURM cluster

Direct Acyclic Graph (DAG) Workflow Submitter for SLURM queueing system

Ansible Galaxy Extras ⭐ 11

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

Variant Calling Pipeline ⭐ 11

HPC based pipelines for variant calling using GATK

Benchbuild ⭐ 11

Empirical-Research Toolkit

Pipelines ⭐ 11

A simple Redis-backed distributed virtual filesystem for co-execution of HPC and data analytics workloads

Ood Images ⭐ 10

A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

Options of Interest: Temporal Abstraction with Interest Functions AAAI 2020

Jupyter O2 ⭐ 10

Run Jupyter on Orchestra 2

Guppy_on_slurm ⭐ 10

Splitting and accelerating the Oxford Nanopore basecaller guppy using CPU with the SLURM job scheduler

Unleash the true power of scheduling

Spark On Slurm ⭐ 10

Slurm Spank Gpu_cmode ⭐ 10

Slurm SPANK plugin to let users change GPU compute mode in jobs

Consensus assembly and variant calling workflow.

Slurm Cheatsheet ⭐ 10

Bert Ner Cmv ⭐ 10

Slurm Tutorial ⭐ 10

Basic building blocks to create a Slurm cluster upon a PC using Docker

Jenlib is a shared library offering various helpers and abstractions for Jenkins CI instances.

Slurminade ⭐ 10

A decorator-based slurm runner.

Ostack Hpc ⭐ 10

Enables HPC Environment in an OpenStack Cloud

Launchpad ⭐ 9

LaunchPad is a light-weighted Slurm job launcher designed for hyper-parameter search.

Paton_group_workflows ⭐ 9

Python Code, shell scripts, templates, submission scripts and compchem specific workflows for use in the Paton Lab

SLURM job completion log database and query tool

Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines

Slurm Banking Plugins ⭐ 9

🏦 Slurm banking plugins to manage service unit usage based on the myBRC API

Hpc Collab ⭐ 9

This project provides provisioned HPC cluster models using underlying virtualization mechanisms.

Slurm Diamond Collector ⭐ 9

A collection of diamond collectors for slurm.

Hyperbolic_hierarchical_clustering ⭐ 9

Code for: Gradient-based Hierarchical Clustering using Continuous Representations of Trees in Hyperbolic Space. Nicholas Monath, Manzil Zaheer, Daniel Silva, Andrew McCallum, Amr Ahmed. KDD 2019.

Hpcmeetsdocker ⭐ 9

Intel Xeon Phi ⭐ 9

Examples for running software on Intel Xeon Phi Co-Processors

Cluster_examples ⭐ 9

Ondemand Info ⭐ 9

Info on CHPC Open OnDemand installation and customization

Submit slurm cluster job(Sbatch) inside python and avoid shell script. Submission cmd can be customized to add more options.

Slurm_cheatsheet ⭐ 9

Some useful commands to interact with the SLURM job scheduler

Submititnow ⭐ 9

A "makeshift" toolkit to create and launch Jobs from existing python scripts on SLURM, and also monitor the status of current and past jobs.

Cookiecutter for snakemake slurm profile

Rpki As0 Bogons ⭐ 9

SLURM file generator for bogons with AS0 as origin

Pangeo Hpc Singularity ⭐ 8

Scripts to run dask and jupyter lab on Singularity using the pangeo-notebook image

Slurm Helper ⭐ 8

Bunch of helper files for the Slurm resource manager

Distributed Tensorflow Benchmarks ⭐ 8

Benchmarking distributed training in TensorFlow.

Slurm Mesos ⭐ 8

Hpc2019_experiments ⭐ 8

Experiments with MKLDNN, pytorch, and Charliecloud containers on the cluster

Ansible Hpc ⭐ 8

Ansible modules for HPC clusters

Eda Examples ⭐ 8

Contains reference architecture scripts for running the OpenPiton regression using auto-scaling SLURM cluster.

Future.batchjobs ⭐ 8

🚀 R package: future.BatchJobs: A Future API for Parallel and Distributed Processing using BatchJobs [Intentionally archived on CRAN on 2021-01-08]

Slurm_jupyter_kernel ⭐ 8

Manage (create, list, modify and delete) and starting jupyter kernels using sbatch

Terraform_softlayer ⭐ 8

Provision various clusters on Softlayer using Terraform, i.e.,Mesosphere DC/OS(GPU), Kubernetes, Slurm (GPU), LSF, Yarn (Spark, XGBoost, GPU), Ingestion(Spark, ZK, Kafka), Spark (XGBoost)... . And a generic Jupyter Notebook for Terraform Apply .

Sc18 Dl Tutorial ⭐ 8

Keras tutorial code for the SC18 tutorial on Deep Learning at Scale

Go Socker ⭐ 8

A wrapper for secure running of Docker containers on Slurm implement in Golang.

Implicit Hyper Opt ⭐ 8

Python Continuous Integration Command Line Engine

Nextflow_pipelines ⭐ 8

The set of NGS processing pipelines used at Babraham

Dada2_guidelines ⭐ 8

A repository with a general dada2 pipeline for amplicon processing

Slurm Spank Lua ⭐ 8

Slurm Lua SPANK plugin

Computing ⭐ 8

General Information for EpiModel/Statnet Researchers

Hpc Infrastructure Scripts ⭐ 8

Scripts used in ILRI's research computing infrastructure

Slurm Utils ⭐ 8

SLURM Array job script

Cloudify Hpc Plugin ⭐ 7

Plugin to allow Cloudify to deploy and orchestrate HPC resources

Julia Slurm Example ⭐ 7

DEPRECATED - see github.com/magerton/FARMTest.jl Example for running Julia with SLURM

Slurm Qog ⭐ 7

Perl script to generate "quality-of-guess" feedback for users about their requested Slurm walltimes.

Allennlp Manager ⭐ 7

[WORK IN PROGRESS] Your manager for AllenNLP experiments

asyncmd is a library to write concurrent code for setup, run and analysis of molecular dynamics simulations using pythons async/await synthax.

Omero Slurm Client ⭐ 7

BIOMERO - A python library for easy connecting between OMERO (jobs) and a Slurm cluster

4 Rna Seq ⭐ 7

A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds

Remap Pipeline ⭐ 7

As the ReMap project expands dramatically and regulatory catalogs for other species are requested, it becomes essential to enable joint efforts between the ReMap team and external teams. This is essential for future collaborative production efforts. Briefly, our pipelines uses SnakeMake either in a Conda or Singularity environment depending on the HPC resources, where Torque and Slurm managers are both supported

A python package that allows easy sbatch job script creation and submissions on hpc clusters, directly from python.

Future.clustermq ⭐ 7

🚀 R package future.clustermq: A Future API for Parallel Processing using 'clustermq'

Slurm is a plugin for Koken that replaces the boring auto-generated slugs with magical numeric slugs.

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