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The Top 23 Wgs Open Source Projects

Open source projects categorized as Wgs
Categories > Wgs
Mosdepth ⭐ 617
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
most recent commit 7 months ago
Platon ⭐ 93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
total releases 10most recent commit 9 months ago
Wholegenomesequencing ⭐ 86
Whole Genome Sequencing analysis, WGS analysis
most recent commit a year ago
Referenceseeker ⭐ 85
Rapid determination of appropriate reference genomes.
total releases 12most recent commit 6 months ago
Raredisease ⭐ 64
Call and score variants from WGS/WES of rare disease patients.
most recent commit 5 months ago
Sv Callers ⭐ 52
Snakemake-based workflow for detecting structural variants in genomic data
most recent commit 2 years ago
Cyrius ⭐ 42
A tool to genotype CYP2D6 with WGS data
total releases 1most recent commit 9 months ago
Seqarray ⭐ 41
Data management of large-scale whole-genome sequence variant calls (Development version only)
most recent commit 5 months ago
Kourami ⭐ 23
Kourami: Graph-guided assembly for HLA alleles
most recent commit 5 years ago
Pan Zea_construct ⭐ 21
Workflow to construct linear representation of pan genome from deep WGS data and public assemblies
most recent commit 8 months ago
Tadrep ⭐ 18
Targeted Detection and Reconstruction of Plasmids
total releases 3most recent commit 10 months ago
Daylily ⭐ 15
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
most recent commit 8 months ago
Icnv ⭐ 15
Integrated copy number variation detection toolset
most recent commit 4 years ago
Rmap ⭐ 15
Bacterial analysis Toolbox for profiling the Resistome of ESKAPE pathogens using WGS
most recent commit 8 months ago
Xutil ⭐ 13
经纬度转换，sqlldr入库，Geometry工具
total releases 3most recent commit a year ago
Vsnp ⭐ 13
vSNP -- validate SNPs
most recent commit 2 years ago
Transflow ⭐ 12
A snakemake workflow for WGS-based tuberculosis transmission analysis
most recent commit 6 months ago
Seave ⭐ 12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
most recent commit 6 years ago
Pyseqarray ⭐ 12
PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)
most recent commit 7 years ago
Bacterial_wgs_training ⭐ 9
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
most recent commit 8 months ago
Wgs_sample_preparation ⭐ 9
Trim, Align to genome, Deduplicate, Realign WGS sequencing samples
most recent commit 6 months ago
Nextgenseq_pipeline ⭐ 8
Exome/Capture/RNASeq Pipeline Implementation using snakemake
most recent commit 5 years ago
Marvel ⭐ 7
Multigranular Analysis of Regulatory Variants on the Epigenomic Landscape
most recent commit 3 years ago
The 5 Latest Releases In Wgs Open Source Projects
Cyrius ⭐ 42
A tool to genotype CYP2D6 with WGS data
total releases 1latest release October 14, 2023most recent commit 9 months ago
Tadrep ⭐ 18
Targeted Detection and Reconstruction of Plasmids
total releases 3latest release August 21, 2023most recent commit 10 months ago
Platon ⭐ 93
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
total releases 10latest release August 10, 2023most recent commit 9 months ago
Referenceseeker ⭐ 85
Rapid determination of appropriate reference genomes.
total releases 12latest release January 14, 2022most recent commit 6 months ago
Xutil ⭐ 13
经纬度转换，sqlldr入库，Geometry工具
total releases 3latest release April 20, 2020most recent commit a year ago
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