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The Top 23 Transcriptomics Open Source Projects

Open source projects categorized as Transcriptomics
Categories > Transcriptomics
Discbio ⭐ 9
A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics
total releases 6most recent commit 6 months ago
Biomm ⭐ 9
BioMM: Biological-informed Multi-stage Machine learning framework for phenotype prediction using omics data
most recent commit a year ago
Spatial ⭐ 9
Single-Cell Spatial Explorer
most recent commit 5 months ago
Hummus ⭐ 9
Molecular interactions inference from single-cell multi-omics data
most recent commit 4 months ago
Bgee_pipeline ⭐ 8
Source code of the Bgee pipeline used to build the Bgee database
most recent commit a year ago
Iasva ⭐ 8
Iteratively Adjusted Surrogate Variable Analysis
most recent commit 3 years ago
Ngs17 ⭐ 8
Materials used during #NGSchool2017
most recent commit 7 years ago
Scplot ⭐ 8
Single cell interactive plotting tools
dependent packages 2total releases 16most recent commit 4 years agopypi scplot} Downloads
Tidyomics ⭐ 8
Easily install and load packages from the tidyomcis ecosystem
most recent commit 4 months ago
Rna Seq ⭐ 8
bioinformatics pipelines
most recent commit a year ago
Personalized_regression ⭐ 8
Personalized Regression
most recent commit 4 years ago
Gsea Api ⭐ 8
Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
total releases 13most recent commit a year ago
Singlecellhaystack Py ⭐ 8
Finding surprising needles (=features) in haystacks (=single cell/spatial genomics data).
total releases 5most recent commit 4 months ago
Gemma.r ⭐ 7
An R wrapper for the Gemma RESTful API
most recent commit 6 months ago
Scrattch.io ⭐ 7
Functions for handling RNA-seq files and formats as input and output for scrattch functions.
most recent commit 2 years ago
Rnagps ⭐ 7
Interpretable model of sub-cellular RNA localization.
most recent commit a year ago
Genestructuretools ⭐ 7
most recent commit 3 years ago
Provisional_cell_ontology ⭐ 7
Draft cell type definitions from data - candidates for inclusion in CL
most recent commit 4 months ago
Trendcatcher ⭐ 7
TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255
most recent commit 3 months ago
Nease ⭐ 7
A network-based approach for exon set enrichment
dependent packages 2total releases 13most recent commit 2 years agopypi nease} Downloads
Spatialdlpfc ⭐ 7
spatialDLPFC project involving Visium (n = 30), Visium SPG (n = 4) and snRNA-seq (n = 19) samples
most recent commit 6 months ago
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7most recent commit 5 months ago
River ⭐ 7
R package for RIVER (RNA-Informed Variant Effect on Regulation)
most recent commit 4 years ago
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