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The Top 23 Structural Bioinformatics Open Source Projects

Open source projects categorized as Structural Bioinformatics
Categories > Structural Bioinformatics
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 5 months ago
Molly.jl ⭐ 344
Molecular simulation in Julia
most recent commit 5 months ago
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38most recent commit 6 months agopypi pdb-tools} Downloads
Lightdock ⭐ 234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 5 months ago
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 5 months ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 6 months ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
most recent commit 5 months ago
Pymolshortcuts ⭐ 50
The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..
most recent commit a year ago
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10most recent commit 7 months ago
Structural Bioinformatics ⭐ 34
This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the University of Milano, originally inspired by https://github.com/pb3lab/ibm3202
most recent commit 5 months ago
Arpeggio ⭐ 33
Calculation of interatomic interactions in molecular structures
most recent commit 3 years ago
Rascore ⭐ 32
A tool for analyzing RAS protein structures
most recent commit 8 months ago
Bio3dview.jl ⭐ 32
A Julia package to view macromolecular structures in the REPL, in a Jupyter notebook/JupyterLab or in Pluto
most recent commit 9 months ago
Packman ⭐ 28
PACKMAN: PACKing and Motion ANalysis
total releases 35most recent commit 5 months ago
Pdb Benchmarks ⭐ 26
Benchmarking common tasks on proteins in various languages and packages
most recent commit 3 years ago
Proteinensembles.jl ⭐ 21
Generate and perturb protein structural ensembles using the ExProSE algorithm
most recent commit 8 months ago
Molstar React ⭐ 18
Molstar as a react component
total releases 8most recent commit a year ago
Haddocking.github.io ⭐ 13
Webpage of the Bonvinlab @ Utrecht University and HADDOCK software
most recent commit 5 months ago
Csb ⭐ 12
A Python framework for structural bioinformatics.
most recent commit 5 months ago
Fingernat ⭐ 12
Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.
most recent commit 2 years ago
Korpm ⭐ 11
Predicting the effect of mutations on protein stability using a simple orientational potential.
most recent commit 10 months ago
Easypymol ⭐ 9
Script to facilitate the making of horizontal scripts
most recent commit 2 years ago
Ponder ⭐ 8
PointNet for Deep Rank: protein-protein interaction scoring using neural networks
most recent commit 4 years ago
The 2 Most Depended On Structural Bioinformatics Open Source Projects
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 6 months agopypi pdb-tools} Downloads
The 6 Latest Releases In Structural Bioinformatics Open Source Projects
Localpdb ⭐ 36
Python package to manage protein structures and their annotations
total releases 10latest release November 05, 2023most recent commit 7 months ago
Packman ⭐ 28
PACKMAN: PACKing and Motion ANalysis
total releases 35latest release August 03, 2023most recent commit 5 months ago
Pdb Tools ⭐ 319
A dependency-free cross-platform swiss army knife for PDB files.
dependent packages 5total releases 38latest release June 23, 2022most recent commit 6 months agopypi pdb-tools} Downloads
Molstar React ⭐ 18
Molstar as a react component
total releases 8latest release April 26, 2022most recent commit a year ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
latest release December 21, 2017most recent commit 5 months ago
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