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The Top 275 Stan Open Source Projects on Github

Categories > Mathematics > Stan
Stan ⭐ 2,118
Stan development repository. The master branch contains the current release. The develop branch contains the latest stable development. See the Developer Process Wiki for details.
Covid19model ⭐ 914
Code for modelling estimated deaths and cases for COVID19.
Brms ⭐ 913
brms R package for Bayesian generalized multivariate non-linear multilevel models using Stan
Pystan2 ⭐ 911
PyStan, the Python interface to Stan
Bda_py_demos ⭐ 831
Bayesian Data Analysis demos for Python
Rstan ⭐ 814
RStan, the R interface to Stan
Orbit ⭐ 680
A Python package for Bayesian forecasting with object-oriented design and probabilistic models under the hood.
Tidybayes ⭐ 616
Bayesian analysis + tidy data + geoms (R package)
Math ⭐ 541
The Stan Math Library is a C++ template library for automatic differentiation of any order using forward, reverse, and mixed modes. It includes a range of built-in functions for probabilistic modeling, linear algebra, and equation solving.
Bda_r_demos ⭐ 441
Bayesian Data Analysis demos for R
Rstanarm ⭐ 296
rstanarm R package for Bayesian applied regression modeling
Bayesplot ⭐ 288
bayesplot R package for plotting Bayesian models
Stancon_talks ⭐ 205
Materials from Stan conferences
Shinystan ⭐ 172
shinystan R package and ShinyStan GUI
Stan.jl ⭐ 171
Stan.jl illustrates the usage of the 'single method' packages, e.g. StanSample, StanOptimize, etc.
Nats Streaming Operator ⭐ 169
NATS Streaming Operator
Modelselection ⭐ 148
Tutorial on model assessment, model selection and inference after model selection
Miscellaneous R Code ⭐ 140
Code that might be useful to others for learning/demonstration purposes, specifically along the lines of modeling and various algorithms. Now almost entirely superseded by the models-by-example repo.
Rstanbook ⭐ 136
『StanとRでベイズ統計モデリング』のサポートページです.
Loo ⭐ 109
loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)
Diffeqbayes.jl ⭐ 103
Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning
Ggmcmc ⭐ 95
Graphical tools for analyzing Markov Chain Monte Carlo simulations from Bayesian inference
R_for_data_science ⭐ 90
Materials for teaching R and tidyverse
Projpred ⭐ 84
Projection predictive variable selection
Turn Client ⭐ 77
STUN & TURN client demo and api with python and C
Gsoc17 Hhmm ⭐ 73
Bayesian Hierarchical Hidden Markov Models applied to financial time series, a research replication project for Google Summer of Code 2017.
Bayescog_wien ⭐ 70
Teaching materials for BayesCog at Faculty of Psychology, University of Vienna
Posteriordb ⭐ 69
Database with posteriors of interest for Bayesian inference
Cmdstanr ⭐ 65
CmdStanR: the R interface to CmdStan
Stan Mode ⭐ 58
Emacs mode for Stan.
Matlabstan ⭐ 54
Matlab interface to Stan, a package for Bayesian inference
Epinow2 ⭐ 54
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
Bayes Vis Paper ⭐ 49
'Visualization in Bayesian workflow' by Gabry, Simpson, Vehtari, Betancourt, and Gelman. (JRSS discussion paper and code)
Bayesian Basics ⭐ 46
🚫 ↩️ A document that introduces Bayesian data analysis.
Stan Ja ⭐ 44
Stanマニュアルの日本語への翻訳プロジェクト
Bda_m_demos ⭐ 42
Bayesian Data Analysis demos for Matlab/Octave
Ssmodels In Stan ⭐ 41
State space models (dynamic linear models, hidden Markov models) implemented in Stan.
Splines_in_stan ⭐ 40
Implementation of B-Splines in Stan
Visibly ⭐ 39
👓 Functions related to R visualizations
Tsbook ⭐ 39
『基礎からわかる時系列分析』（技術評論社，2018年）のサポートサイトです。
Mmm_stan ⭐ 39
Python/STAN Implementation of Multiplicative Marketing Mix Model, with deep dive into Adstock (carry-over effect), ROAS, and mROAS
Stan Vim ⭐ 36
A Vim plugin for the Stan probabilistic programming language.
Yaps ⭐ 35
A surface language for programming Stan models using python syntax
Noisy Networks Measurements ⭐ 35
Noisy network measurement with stan
Torsten ⭐ 33
library of C++ functions that support applications of Stan in Pharmacometrics
Walker ⭐ 33
Bayesian Generalized Linear Models with Time-Varying Coefficients
Cmdstan.jl ⭐ 32
CmdStan.jl v6 provides an alternative, older Julia wrapper to Stan's `cmdstan` executable.
Natsclient ⭐ 31
NATS 2.x Client Library
Idealstan ⭐ 31
idealstan offers item-response theory (IRT) ideal-point estimation for binary, ordinal, counts and continuous responses with time-varying and missing-data inference. Latent space model also included. Full and approximate Bayesian sampling with 'Stan' (www.mc-stan.org).
Helpful_stan_functions ⭐ 29
Stantargets ⭐ 29
Reproducible Bayesian data analysis pipelines with targets and cmdstanr
Statistical Modeling Examples ⭐ 28
Basic statistical modelling examples.
Rstantools ⭐ 28
Tools for Developing R Packages Interfacing with Stan
Carstan ⭐ 27
Conditional autoregressive models in Stan
Stantuner ⭐ 26
This code uses the algebra solver in Stan (https://mc-stan.org/) to find the parameters of a distribution that produce a desired tail behavior.
Baggr ⭐ 25
R package for Bayesian meta-analysis models, using Stan
Covidseir ⭐ 22
Bayesian SEIR model to estimate the effects of social-distancing on COVID-19
Mathematicastan ⭐ 22
A Mathematica package to interact with CmdStan
Diff Means Half Dozen Ways ⭐ 21
Run standard t-tests, simulations, and Bayesian difference in means tests with R and Stan
Streammetabolizer ⭐ 21
streamMetabolizer uses inverse modeling to estimate aquatic metabolism (photosynthesis and respiration) from time series data on dissolved oxygen, water temperature, depth, and light.
Embracinguncertainty ⭐ 20
Material for AMLD 2020 workshop "Bayesian Inference: embracing uncertainty"
Bayesworkshop2021 ⭐ 19
Causalqueries ⭐ 18
Bayesian inference from binary causal models
Covidrtpcr ⭐ 17
Analysis of RT-PCR sensitivity by day since exposure or symptom onset
Lgpr ⭐ 17
R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for inferring covariate effects and assessing covariate relevances. Various models can be specified using a convenient formula syntax.
Bayesforecast ⭐ 17
Automatic forecasting and Bayesian modeling for time series with Stan
Naro_toukei ⭐ 17
農研機構統計研修「ベイズ統計モデリングとMCMC」
Stancon2018helsinki_intro ⭐ 17
StanCon2018 Helsinki Tutorial
Bayesian ⭐ 16
Bindings for Bayesian TidyModels
Phylostan ⭐ 15
Phylogenetic inference using Stan
Irt ⭐ 14
IRT ideal point models in R using Stan
Bayes R Jags Intro ⭐ 14
An introduction to hierarchical Bayesian modelling with R, JAGS and STAN
Euro2021predictions ⭐ 13
Metabma ⭐ 12
Bayesian Model Averaging for Random and Fixed Effects Meta-Analysis
Rater ⭐ 12
R package to fit statistical models to repeated categorical rating data using Stan
Course ⭐ 12
Slides and assignments for an introductory course in hierarchical Bayesian modeling
Mth225_spring2016 ⭐ 12
MTH225 Statistics for Science Spring 2016
Notebooks ⭐ 12
Collection of (unfinished) notebooks
Ubms ⭐ 12
Fit models to data from unmarked animals using Stan. Uses a similar interface to the R package 'unmarked', while providing the advantages of Bayesian inference and allowing estimation of random effects.
Statisticalrethinkingstan.jl ⭐ 12
StatististicalRethinking using Stan and Pluto notebooks.
Docs ⭐ 11
Documents that go into methodological detail regarding various statistical procedures.
Scr Stan ⭐ 11
Spatial capture-recapture models in Stan
Clj Stan ⭐ 11
A library to interface with STAN.
Plant Pollinator Inference ⭐ 11
Code for "Reconstruction of plant--pollinator networks from observational data"
Bpl ⭐ 11
Bayesian models of football leagues
Trendinessoftrends ⭐ 10
The Trendiness of Trends
Bugs Examples In Stan ⭐ 10
Simon Jackman's "BUGS Examples" translated into Stan
Qcbs_stan_workshop ⭐ 9
Introduction to Stan, rstan & rstanarm
Seir Covid19 ⭐ 9
Covidestim ⭐ 8
Bayesian nowcasting with adjustment for delayed and incomplete reporting to estimate COVID-19 infections in the United States
Nivstan ⭐ 8
Biostan ⭐ 8
Materials for BioC-2016 workshop entitled "Introduction to Bayesian Inference using Stan with Applications to Cancer Genomics"
Stan4bart ⭐ 8
Uses Stan sampler and math library to semiparametrically fit linear and multilevel models with additive Bayesian Additive Regression Tree (BART) components.
Complex Coinfection Inference ⭐ 8
Bayesian inference of effective contagion models from population level data, with STAN
Shot Generation ⭐ 8
Bayesian modelling of shot generation and conversion in soccer
Pydatabratislava ⭐ 8
All the documents for PyDataBratislava
Multi_output_gps ⭐ 8
Mbsts ⭐ 7
Multivariate Bayesian Structural Time Series in Stan
Paramedic ⭐ 7
Predicting Absolute and Relative Abundance by Modeling Efficiency to Derive Intervals and Concentrations
Bayesian Statistics Project ⭐ 7
Project for the Bayesian Statistics exam at University of Trieste
1-100 of 275 projects

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Advertising 📦 9
All Projects
Application Programming Interfaces 📦 120
Applications 📦 181
Artificial Intelligence 📦 72
Blockchain 📦 70
Build Tools 📦 111
Cloud Computing 📦 79
Code Quality 📦 28
Collaboration 📦 30
Command Line Interface 📦 48
Community 📦 81
Companies 📦 60
Compilers 📦 60
Computer Science 📦 74
Configuration Management 📦 39
Content Management 📦 167
Control Flow 📦 197
Data Formats 📦 77
Data Processing 📦 266
Data Storage 📦 132
Economics 📦 60
Frameworks 📦 198
Games 📦 122
Graphics 📦 103
Hardware 📦 148
Integrated Development Environments 📦 47
Learning Resources 📦 147
Legal 📦 28
Libraries 📦 119
Lists Of Projects 📦 21
Machine Learning 📦 336
Mapping 📦 61
Marketing 📦 15
Mathematics 📦 55
Media 📦 228
Messaging 📦 97
Networking 📦 304
Operating Systems 📦 84
Operations 📦 120
Package Managers 📦 52
Programming Languages 📦 229
Runtime Environments 📦 96
Science 📦 42
Security 📦 375
Social Media 📦 26
Software Architecture 📦 70
Software Development 📦 68
Software Performance 📦 57
Software Quality 📦 127
Text Editors 📦 45
Text Processing 📦 131
User Interface 📦 310
User Interface Components 📦 465
Version Control 📦 29
Virtualization 📦 68
Web Browsers 📦 38
Web Servers 📦 25
Web User Interface 📦 194
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