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The Top 10 Single Cell Sequencing Open Source Projects

Open source projects categorized as Single Cell Sequencing
Categories > Single Cell Sequencing
Scp ⭐ 253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
most recent commit 6 months ago
Tidysinglecellexperiment ⭐ 32
Brings SingleCellExperiment objects to the tidyverse
most recent commit 7 months ago
Split Seq_demultiplexing ⭐ 25
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
most recent commit 9 months ago
Popscle ⭐ 22
A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools
most recent commit 3 years ago
Vitae ⭐ 22
Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
total releases 18most recent commit 9 months ago
Scseqr ⭐ 16
This package has migrated to https://github.com/rezakj/iCellR please use iCellR instead of scSeqR for more functionalities and updates.
most recent commit 2 years ago
Mquad ⭐ 12
Tool for modelling of mitochondrial heteroplasmy
total releases 7most recent commit a year ago
Spreading Correction ⭐ 11
Supplementary information to "Computational correction of index switching in multiplexed sequencing libraries", Anton J.M. Larsson, Geoff Stanley, Rahul Sinha, Irving L. Weissman and Rickard Sandberg
most recent commit 4 years ago
Wilson_muto_ncomm_2022 ⭐ 8
Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq
most recent commit a year ago
Resvae ⭐ 7
resVAE is a restricted latent variational autoencoder that we wrote to uncover hidden structures in gene expression data, especially using single-cell RNA sequencing. In principle it can be used with any hierarchically structured data though, so feel free to play around with it.
most recent commit a year ago
The 2 Latest Releases In Single Cell Sequencing Open Source Projects
Mquad ⭐ 12
Tool for modelling of mitochondrial heteroplasmy
total releases 7latest release July 24, 2023most recent commit a year ago
Vitae ⭐ 22
Joint Trajectory Inference for Single-cell Genomics Using Deep Learning with a Mixture Prior
total releases 18latest release May 31, 2021most recent commit 9 months ago
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