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The Top 8 Short Reads Open Source Projects

Open source projects categorized as Short Reads
Categories > Short Reads
Sneakysnake ⭐ 44
SneakySnake🐍 is the first and the only pre-alignment filtering algorithm that works efficiently and fast on modern CPU, FPGA, and GPU architectures. It greatly (by more than two orders of magnitude) expedites sequence alignment calculation for both short and long reads. Described in the Bioinformatics (2020) by Alser et al. https://arxiv.org/abs/1910.09020.
most recent commit a year ago
Clairs ⭐ 42
ClairS - a deep-learning method for long-read somatic small variant calling
most recent commit 5 months ago
Ssake ⭐ 24
🍶Genome assembly with short sequence reads
most recent commit 5 months ago
Genomeanalysismodule ⭐ 21
Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.
most recent commit 2 years ago
Fraggenescanrs ⭐ 10
Better and faster Rust implementation of the FragGeneScan gene prediction model for short and error-prone reads.
total releases 2most recent commit 2 years ago
Varathon ⭐ 7
A scalable variant calling and benchmarking framework supporting both short and long reads.
most recent commit 3 years ago
Vstrains ⭐ 7
VStrains is a de novo approach for reconstructing strains from viral quasispecies.
most recent commit a year ago
Tasr ⭐ 6
Targeted Assembly of Short Reads
most recent commit 6 months ago
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