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The Top 23 Scrna Seq Analysis Open Source Projects

Open source projects categorized as Scrna Seq Analysis
Categories > Scrna Seq Analysis
Scp ⭐ 253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
most recent commit 6 months ago
Single Cell Papers With Code ⭐ 193
Papers with code for single cell related papers
most recent commit a year ago
Palantir ⭐ 184
Single cell trajectory detection
dependent packages 2total releases 10most recent commit 5 months agopypi palantir} Downloads
Souporcell ⭐ 134
Clustering scRNAseq by genotypes
most recent commit 8 months ago
Meld ⭐ 84
Quantifying experimental perturbations at single cell resolution
dependent packages 1total releases 12most recent commit a year agopypi meld} Downloads
Scevan ⭐ 65
R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.
most recent commit 5 months ago
Scgnn ⭐ 53
scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks
most recent commit 3 years ago
Supercell ⭐ 44
Coarse-graining of large single-cell RNA-seq data into metacells
most recent commit 6 months ago
Scclustviz ⭐ 42
Explore and share your scRNAseq clustering results
most recent commit 10 months ago
Harmony ⭐ 38
Harmony framework for connecting scRNA-seq data from discrete time points
total releases 3most recent commit a year ago
Netbid ⭐ 28
Data-driven Network-based Bayesian Inference of Drivers
most recent commit a year ago
Embedr ⭐ 28
Statistical quality evaluation of dimensionality reduction algorithms
most recent commit 10 months ago
Scalign ⭐ 28
A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches
most recent commit 3 years ago
Split Seq_demultiplexing ⭐ 25
An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data
most recent commit 9 months ago
Northstar ⭐ 23
Single cell type annotation guided by cell atlases, with freedom to be queer
total releases 7most recent commit 2 years ago
Bitfam ⭐ 23
BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.
most recent commit a year ago
Frmatch ⭐ 18
Cell type matching in single-cell RNA-sequencing data using FR-Match
most recent commit 2 years ago
Rvagene ⭐ 14
Recurrent Variational Auto gene encoder
most recent commit a year ago
Gsfa ⭐ 11
R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.
most recent commit 9 months ago
Antler ⭐ 10
R package for single-cell RNA-sequencing analysis
most recent commit 3 years ago
Yascp ⭐ 9
scRNA analysis pipeline
most recent commit 5 months ago
Projectsvr ⭐ 9
A package for reference mapping and nice visualization
most recent commit 7 months ago
Pancreas_ductal_scrnaseq ⭐ 9
The following repository contains code for all scRNAseq analysis and visualization performed in the paper: Single cell resolution analysis of the human pancreatic ductal progenitor cell niche
most recent commit 3 years ago
The 2 Most Depended On Scrna Seq Analysis Open Source Projects
Palantir ⭐ 184
Single cell trajectory detection
dependent packages 2total releases 10latest release November 29, 2023most recent commit 5 months agopypi palantir} Downloads
Meld ⭐ 84
Quantifying experimental perturbations at single cell resolution
dependent packages 1total releases 12latest release July 20, 2023most recent commit a year agopypi meld} Downloads
The 5 Latest Releases In Scrna Seq Analysis Open Source Projects
Palantir ⭐ 184
Single cell trajectory detection
dependent packages 2total releases 10latest release November 29, 2023most recent commit 5 months agopypi palantir} Downloads
Meld ⭐ 84
Quantifying experimental perturbations at single cell resolution
dependent packages 1total releases 12latest release July 20, 2023most recent commit a year agopypi meld} Downloads
Northstar ⭐ 23
Single cell type annotation guided by cell atlases, with freedom to be queer
total releases 7latest release July 25, 2022most recent commit 2 years ago
Harmony ⭐ 38
Harmony framework for connecting scRNA-seq data from discrete time points
total releases 3latest release May 10, 2020most recent commit a year ago
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