Awesome Open Source
Awesome Open Source
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The Top 115 Science Open Source Projects

CategoriesΒ >Β ScienceΒ >Β Science
Awesome Datascience ⭐11,077
πŸ“ An awesome Data Science repository to learn and apply for real world problems.
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Awesome Python Applications ⭐10,787
πŸ’Ώ Free software that works great, and also happens to be open-source Python.
Sympy ⭐6,647
A computer algebra system written in pure Python
Machine Learning Mindmap ⭐4,321
A mindmap summarising Machine Learning concepts, from Data Analysis to Deep Learning.
Deep Learning Papers ⭐2,920
Papers about deep learning ordered by task, date. Current state-of-the-art papers are labelled.
Astropy ⭐2,352
Repository for the Astropy core package
Stdlib ⭐2,172
✨ Standard library for JavaScript and Node.js. ✨
Deepvariant ⭐1,876
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Stellarium ⭐1,705
Stellarium is a free GPL software which renders realistic skies in real time with OpenGL. It is available for Linux/Unix, Windows and MacOSX. With Stellarium, you really see what you can see with your eyes, binoculars or a small telescope.
Singularity ⭐1,535
Singularity: Application containers for Linux
Science Based Games List ⭐1,371
Science-based games - a collaborative list
Pint ⭐1,081
Operate and manipulate physical quantities in Python
Common Workflow Language ⭐1,073
Repository for the CWL standards. Use https://cwl.discourse.group/ for support 😊
Reading ⭐1,055
A list of computer-science readings I recommend
Deeplearning Mindmap ⭐1,026
A mindmap summarising Deep Learning concepts.
Boinc ⭐1,024
Open-source software for volunteer computing and grid computing.
Arxiv Vanity ⭐1,010
Renders papers from arXiv as responsive web pages so you don't have to squint at a PDF.
Goldencheetah ⭐882
Performance Software for Cyclists, Runners and Triathletes
Psychopy ⭐813
For running psychology and neuroscience experiments
Latex Examples ⭐773
Examples for the usage of LaTeX
Gatk ⭐749
Official code repository for GATK versions 4 and up
Glumpy ⭐733
Python+Numpy+OpenGL: fast, scalable and beautiful scientific visualization
Galaxy ⭐693
Data intensive science for everyone.
Plotters ⭐655
A rust drawing library for high quality data plotting for both WASM and native, statically and realtimely πŸ¦€ πŸ“ˆπŸš€
Pybossa ⭐636
PYBOSSA is the ultimate crowdsourcing framework (aka microtasking) to analyze or enrich data that can't be processed by machines alone.
Engrafo ⭐608
Convert LaTeX documents into beautiful responsive web pages using LaTeXML.
Obspy ⭐598
ObsPy: A Python Toolbox for seismology/seismological observatories.
Thrive ⭐541
The main repository for the development of the evolution game Thrive.
Sciencefair ⭐530
The futuristic, fabulous and free desktop app for working with scientific literature πŸ”¬ πŸ“–
Pymatgen ⭐524
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.
Code Dot Org ⭐523
The code powering code.org and studio.code.org
Osf.io ⭐521
Facilitating Open Science
Science Journal Ios ⭐507
Use the sensors in your mobile devices to perform science experiments. Science doesn’t just happen in the classroom or labβ€”tools like Science Journal let you see how the world works with just your phone.
Deta_parser ⭐460
εΏ«ι€ŸδΈ­ζ–‡εˆ†θ―εˆ†ζžword segmentation
Librmath.js ⭐411
Javascript Pure Implementation of Statistical R "core" numerical libRmath.so
Openml ⭐404
Open Machine Learning
Recipy ⭐396
Effortless method to record provenance in Python
Mdanalysis ⭐389
MDAnalysis is a Python library to analyze molecular dynamics trajectories.
Brian2 ⭐386
Brian is a free, open source simulator for spiking neural networks.
Sklearn Classification ⭐377
Data Science Notebook on a Classification Task, using sklearn and Tensorflow.
Ruptures ⭐346
ruptures: change point detection in Python
Poliastro ⭐333
poliastro - πŸš€ Astrodynamics in Python
Cbioportal ⭐301
cBioPortal for Cancer Genomics
Nanopolish ⭐295
Signal-level algorithms for MinION data
Opensim Core ⭐285
SimTK OpenSim C++ libraries and command-line applications, and Java/Python wrapping.
Anystyle ⭐268
Fast and smart citation reference parsing
Plasmapy ⭐265
An open source Python package for plasma science that is under development
Jvarkit ⭐263
Java utilities for Bioinformatics
Awesome Sentinel ⭐246
curated list of awesome tools, tutorials and APIs for Copernicus Sentinel satellite data
Plantcv ⭐245
Plant image analysis using OpenCV
Pandoc Scholar ⭐230
Create beautiful and semantically meaningful articles with pandoc.
Resources ⭐225
πŸ“– Huge curated collection (archive) of links of Tech, Science, Economics, Politics, Life, Philosophy, Conferences, Videos and much more resources from everyday surfing. ⭐️ Since October 21, 2017.
Ten Rules ⭐213
Ten simple rules for better figures
Artiq ⭐211
A leading-edge control system for quantum information experiments
Anvio ⭐209
An analysis and visualization platform for 'omics data
Reprozip ⭐206
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Cwltool ⭐189
Common Workflow Language reference implementation
Abyss ⭐188
πŸ”¬ Assemble large genomes using short reads
Codemeta ⭐187
Minimal metadata schemas for science software and code, in JSON-LD
Homebrew Bio ⭐183
πŸΊπŸ”¬ Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
Observations ⭐177
Tools for loading standard data sets in machine learning
Openflexure_microscope ⭐173
This repository has now moved to GitLab.com/openflexure/openflexure-microscope
Pymeasure ⭐168
Scientific measurement library for instruments, experiments, and live-plotting
Pyzo ⭐162
Python to the people
Docker Galaxy Stable ⭐161
πŸ³πŸ“ŠπŸ“š Docker Images tracking the stable Galaxy releases.
Php Science Textrank ⭐160
πŸŒ€ ⚑️ 🌍 TextRank (automatic text summarization) for PHP7
Popper ⭐153
Github actions runner in Python (HCL syntax)
Python Quickui ⭐153
Scientific One-Liner Interactive GUI Library
Neurodocker ⭐147
Generate custom Docker and Singularity images, and minimize existing containers
Tidyversity ⭐147
πŸŽ“ Tidy tools for academics
Sciblog ⭐138
A blog made with django designed like a scientific paper written in Latex.
Drwatson.jl ⭐133
The perfect sidekick to your scientific inquiries
Math Science Video Lectures ⭐131
List of Science courses with video lectures
Astropy Tutorials ⭐129
Tutorials for the Astropy Project
Awesome Biology ⭐128
Curated list of resources for Biology.
Rnaseq Workflow ⭐122
A repository for setting up a RNAseq workflow
Sci ⭐117
[MIRROR] Gentoo Science Overlay
Code Is Science ⭐117
Scientific code needs to be open source and peer reviewed
Periodic Table ⭐114
Periodic elements data
Landgreen.github.io ⭐109
Landgreen's public site: physics notes, n-gon
Jortsort ⭐108
the official website for jortSorting
Design Of Experiment Python ⭐102
Design-of-experiment (DOE) generator for science, engineering, and statistics
Hyphy ⭐99
HyPhy: Hypothesis testing using Phylogenies
Citizen Science ⭐99
πŸ”¬ A repository of resources related to citizen, community-based and/or non-institutional science
Rucio ⭐95
Rucio - Scientific Data Management
Astronn ⭐93
Deep Learning for Astronomers with Tensorflow
Django Publications ⭐88
A Django app for managing scientific publications.
Symengine.py ⭐88
Python wrappers for SymEngine
Ember Osf Web ⭐88
Ember front-end for the Open Science Framework
Gromacswrapper ⭐87
GromacsWrapper is a python package that wraps system calls to Gromacs tools into thin classes. This allows for fairly seamless integration of the gromacs tools (v4.6.x, v5.x, 2016.x, 2018.x, 2019.x, all with the same Python code) into python scripts.
Expyriment ⭐82
Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
Py6s ⭐81
A Python interface to the 6S Radiative Transfer Model
Pydap ⭐81
A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP or DODS).
Refractiveindex.info Database ⭐72
Database of optical constants
Genomics ⭐72
a collection of scripts and notes related to genomics and bioinformatics
Tardis ⭐71
TARDIS - Temperature And Radiative Diffusion In Supernovae
Mendelable ⭐69
Mendelable displays information about the elements of the periodic table in a modern and pleasant way.
Freud ⭐57
Powerful, efficient particle trajectory analysis in scientific Python.
Abipy ⭐54
Open-source library for analyzing the results produced by ABINIT
Arcs ⭐52
🌈Scaffold genome sequence assemblies using linked read sequencing data
1-100 of 115 projects