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The Top 10 Sequencing Sars Cov 2 Open Source Projects

Open source projects categorized as Sequencing Sars Cov 2
Categories > Sars Cov 2
Categories > Science > Sequencing
Ncov ⭐ 1,348
Nextstrain build for novel coronavirus SARS-CoV-2
most recent commit 3 months ago
Serratus ⭐ 219
Ultra-deep search for novel viruses
most recent commit a year ago
Nextclade ⭐ 190
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
dependent packages 2total releases 52most recent commit 3 months agonpm @neherlab/nextclade} Downloads
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Fastv ⭐ 56
An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infectious diseases, like COVID-19.
most recent commit 4 years ago
Porecov ⭐ 38
SARS-CoV-2 workflow for nanopore sequence data
most recent commit 3 months ago
Desh Data ⭐ 22
Sequence lineage information extracted from RKI sequence data repo
most recent commit 2 years ago
Varskip ⭐ 8
VarSkip multiplex PCR designs for SARS-CoV-2 sequencing
most recent commit 2 years ago
Ont Analysis Toolkit ⭐ 6
A toolkit for monitoring ONT MinION sequencing, followed by data analysis, for viral genomes amplified with tiled amplicon sequencing.
most recent commit 8 months ago
Ampseer ⭐ 5
Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate between ARTIC v3, ARTIC v4, ARTIC v4.1, VarSkip 1a, VarSkip 2, Midnight and VarSkip Long primer sets sequenced by Illumina or ONT.
most recent commit 2 years ago
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