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The Top 23 Sars Cov 2 Open Source Projects

Open source projects categorized as Sars Cov 2
Categories > Sars Cov 2
Covid 19 Data ⭐ 5,617
Data on COVID-19 (coronavirus) cases, deaths, hospitalizations, tests • All countries • Updated daily by Our World in Data
most recent commit 3 months ago
Awesome Coronavirus ⭐ 1,537
🦠 Huge collection of useful projects and resources for COVID-19 (2019 novel Coronavirus)
most recent commit a year ago
Covid19_scenarios ⭐ 1,380
Models of COVID-19 outbreak trajectories and hospital demand
most recent commit 2 years ago
Ncov ⭐ 1,348
Nextstrain build for novel coronavirus SARS-CoV-2
most recent commit 3 months ago
Covid Net ⭐ 1,129
COVID-Net Open Source Initiative
most recent commit a year ago
Coronavirus ⭐ 1,108
Folding@home COVID-19 efforts
most recent commit 4 years ago
Makair ⭐ 724
🫁 The world's first open-source ventilator tested on human patients. Mass-producible at a low cost (~2000€).
most recent commit 3 years ago
Seirsplus ⭐ 571
Models of SEIRS epidemic dynamics with extensions, including network-structured populations, testing, contact tracing, and social distancing.
total releases 51most recent commit 2 years ago
Ncov2019 ⭐ 424
query stats of infected coronavirus cases
most recent commit 3 years ago
Covariants ⭐ 310
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
most recent commit 3 months ago
Open Source Covid 19 ⭐ 230
A global collection of Open Source projects during COVID-19
most recent commit a year ago
Serratus ⭐ 219
Ultra-deep search for novel viruses
most recent commit a year ago
Nextclade ⭐ 190
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
dependent packages 2total releases 52most recent commit 3 months agonpm @neherlab/nextclade} Downloads
Graph Theory ⭐ 178
Julia and Python complex system applications in ecology, epidemiology, sociology, economics & finance; network science models including Bianconi-Barabási, Barabási-Albert, Watts-Strogatz, Waxman Model & Erdős-Rényi; graph theory algorithms involving Gillespie, Bron Kerbosch, Ramsey, Bellman Ford, A*, Kruskal, Borůvka, Prim, Dijkstra, DSatur, Randomized Distributed, Vizing, Topological Sort, DFS, BFS
most recent commit 2 years ago
Covid 19_unified Dataset ⭐ 168
Unified COVID-19 Dataset
most recent commit a year ago
Covid 19 Impfungen_in_deutschland ⭐ 166
Gemäß Impfverordnung sind alle Impfdaten täglich dem Robert Koch Institut (RKI) zu melden. Die Impfkampagne wurde in ihrem Verlauf um immer weitere Leistungserbringer erweitert, für die mehrere Meldeportale eingerichtet wurden, die in diesem Dokument beschrieben werden.
most recent commit 3 months ago
Pyross ⭐ 160
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python
total releases 37most recent commit 10 months ago
Covid 19 Detection Flask App Based On Chest X Rays And Ct Scans ⭐ 121
COVID-19 Detection Chest X-rays and CT scans: COVID-19 Detection based on Chest X-rays and CT Scans using four Transfer Learning algorithms: VGG16, ResNet50, InceptionV3, Xception. The models were trained for 500 epochs on around 1000 Chest X-rays and around 750 CT Scan images on Google Colab GPU. A Flask App was later developed wherein user can upload Chest X-rays or CT Scans and get the output of possibility of COVID infection.
most recent commit 3 months ago
V Pipe ⭐ 119
V-pipe is a pipeline designed for analysing NGS data of short viral genomes
most recent commit 4 months ago
Covid19 Review ⭐ 117
A collaborative review of the emerging COVID-19 literature. Join the chat here:
most recent commit 9 months ago
Usher ⭐ 112
Ultrafast Sample Placement on Existing Trees
most recent commit 5 months ago
Covidnet Ct ⭐ 108
COVID-Net Open Source Initiative - Models and Data for COVID-19 Detection in Chest CT
most recent commit 2 years ago
Viralrecon ⭐ 101
Assembly and intrahost/low-frequency variant calling for viral samples
most recent commit 7 months ago
The 2 Most Depended On Sars Cov 2 Open Source Projects
Nextclade ⭐ 190
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
dependent packages 2total releases 52latest release April 27, 2022most recent commit 3 months agonpm @neherlab/nextclade} Downloads
Cli Corona ⭐ 15
📈 Track COVID-19 (2019 novel Coronavirus) statistics via the command line.
dependent packages 2total releases 24latest release July 22, 2020most recent commit 3 years agonpm cli-corona} Downloads
The 10 Latest Releases In Sars Cov 2 Open Source Projects
Covid19.analytics ⭐ 34
R package to obtain and analyze live data from the nCOVID19 coronavirus
total releases 12latest release October 15, 2023most recent commit 2 years ago
Ncov2019 ⭐ 18
:microbe: Exploring COVID-19 data
total releases 4latest release March 01, 2023most recent commit a year ago
Nextclade ⭐ 190
Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement
dependent packages 2total releases 52latest release April 27, 2022most recent commit 3 months agonpm @neherlab/nextclade} Downloads
Pyross ⭐ 160
PyRoss: inference, forecasts, and optimised control of epidemiological models in Python
total releases 37latest release April 19, 2022most recent commit 10 months ago
Pyncov 19 ⭐ 20
Flexible mechanistic epidemiological model to learn and predict the spread of COVID-19
total releases 7latest release August 14, 2021most recent commit 5 months ago
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