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The Top 17 Reproducible Science Open Source Projects
Categories
>
Science
>
Reproducible Science
Sacred
⭐
3,433
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Singularity
⭐
2,090
Singularity: Application containers for Linux
Nextflow
⭐
1,376
A DSL for data-driven computational pipelines
Rrtools
⭐
513
rrtools: Tools for Writing Reproducible Research in R
Wdl
⭐
447
Workflow Description Language - Specification and Implementations
Containerit
⭐
250
Package an R workspace and all dependencies as a Docker container
Reprozip
⭐
238
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Fglab
⭐
219
Future Gadget Laboratory
Liftr
⭐
158
🐳 Containerize R Markdown documents for continuous reproducibility
Awesome Reproducible Research
⭐
125
A curated list of reproducible research case studies, projects, tutorials, and media
Sarek
⭐
124
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Everware
⭐
112
Everware is about re-useable science, it allows people to jump right in to your research code.
Sarek
⭐
100
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
Vistrails
⭐
95
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Dcmjs
⭐
94
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
Pyseer
⭐
45
SEER, reimplemented in python 🐍🔮
Analysispreservation.cern.ch
⭐
37
Source code for the CERN Analysis Preservation portal
1-17 of 17 projects
Advertising
📦 10
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Application Programming Interfaces
📦 124
Applications
📦 192
Artificial Intelligence
📦 78
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📦 73
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📦 113
Cloud Computing
📦 80
Code Quality
📦 28
Collaboration
📦 32
Command Line Interface
📦 49
Community
📦 83
Companies
📦 60
Compilers
📦 63
Computer Science
📦 80
Configuration Management
📦 42
Content Management
📦 175
Control Flow
📦 213
Data Formats
📦 78
Data Processing
📦 276
Data Storage
📦 135
Economics
📦 64
Frameworks
📦 215
Games
📦 129
Graphics
📦 110
Hardware
📦 152
Integrated Development Environments
📦 49
Learning Resources
📦 166
Legal
📦 29
Libraries
📦 129
Lists Of Projects
📦 22
Machine Learning
📦 347
Mapping
📦 64
Marketing
📦 15
Mathematics
📦 55
Media
📦 239
Messaging
📦 98
Networking
📦 315
Operating Systems
📦 89
Operations
📦 121
Package Managers
📦 55
Programming Languages
📦 245
Runtime Environments
📦 100
Science
📦 42
Security
📦 396
Social Media
📦 27
Software Architecture
📦 72
Software Development
📦 72
Software Performance
📦 58
Software Quality
📦 133
Text Editors
📦 49
Text Processing
📦 136
User Interface
📦 330
User Interface Components
📦 514
Version Control
📦 30
Virtualization
📦 71
Web Browsers
📦 42
Web Servers
📦 26
Web User Interface
📦 210
