Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 23 Reproducible Science Open Source Projects

Open source projects categorized as Reproducible Science
Categories > Science > Reproducible Science
Sacred ⭐ 4,112
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
dependent packages 33total releases 29most recent commit 21 days agopypi sacred} Downloads
Singularity ⭐ 2,464
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
total releases 18most recent commit a year ago
Nextflow ⭐ 2,221
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 12 hours ago
Wdl ⭐ 694
Workflow Description Language - Specification and Implementations
total releases 20most recent commit 13 days ago
Rescience ⭐ 675
The ReScience journal. Reproducible Science is Good. Replicated Science is better.
most recent commit a year ago
Rrtools ⭐ 619
rrtools: Tools for Writing Reproducible Research in R
most recent commit 9 months ago
Showyourwork ⭐ 488
A workflow for reproducible and open scientific articles
total releases 29most recent commit 13 days ago
Reprozip ⭐ 285
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
dependent packages 6total releases 31most recent commit 19 days agopypi reprounzip} Downloads
Awesome Reproducible Research ⭐ 282
A curated list of reproducible research case studies, projects, tutorials, and media
most recent commit 16 days ago
Containerit ⭐ 270
Package an R workspace and all dependencies as a Docker container
most recent commit 2 years ago
Hydra Zen ⭐ 236
Create powerful Hydra applications without the yaml files and boilerplate code.
dependent packages 5total releases 61most recent commit a day agopypi hydra-zen} Downloads
Fglab ⭐ 207
Future Gadget Laboratory
most recent commit 6 years ago
Single Cell Papers With Code ⭐ 193
Papers with code for single cell related papers
most recent commit 5 months ago
Itk Wasm ⭐ 166
High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures
dependent packages 25total releases 23most recent commit 4 days agopypi itkwasm} Downloads
Liftr ⭐ 160
🐳 Containerize R Markdown documents for continuous reproducibility
most recent commit 2 years ago
Shournal ⭐ 136
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
most recent commit a month ago
Datadeps.jl ⭐ 136
reproducible data setup for reproducible science
most recent commit 6 months ago
Sarek ⭐ 126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
most recent commit 4 years ago
Everware ⭐ 111
Everware is about re-useable science, it allows people to jump right in to your research code.
most recent commit 5 years ago
Dcmjs ⭐ 97
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
most recent commit 2 years ago
Mosqito ⭐ 93
MoSQITo is a unified and modular development framework of key sound quality metrics favoring reproducible science and efficient shared scripting among engineers, teachers and researchers community.
dependent packages 2total releases 19most recent commit 2 months agopypi mosqito} Downloads
Vistrails ⭐ 92
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
most recent commit 6 years ago
Tcpdbench ⭐ 82
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
most recent commit a year ago
The 10 Most Depended On Reproducible Science Open Source Projects
Pystow ⭐ 31
👜 Easily pick a place to store data for your Python code.
dependent packages 45total releases 51latest release November 07, 2023most recent commit a month agopypi pystow} Downloads
Sacred ⭐ 4,112
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
dependent packages 33total releases 29latest release November 13, 2023most recent commit 21 days agopypi sacred} Downloads
Itk Wasm ⭐ 166
High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures
dependent packages 25total releases 23latest release September 29, 2023most recent commit 4 days agopypi itkwasm} Downloads
Nextflow ⭐ 2,221
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 12 hours ago
Hydra Zen ⭐ 236
Create powerful Hydra applications without the yaml files and boilerplate code.
dependent packages 5total releases 61latest release November 27, 2023most recent commit a day agopypi hydra-zen} Downloads
Aspecd ⭐ 6
Python framework for handling spectroscopic data focussing on reproducibility
dependent packages 4total releases 21latest release September 08, 2023most recent commit 2 months agopypi aspecd} Downloads
Emp ⭐ 44
:microscope: Empirical CLI
dependent packages 2total releases 14latest release July 15, 2017most recent commit 3 years agonpm empirical-cli} Downloads
Testipynb ⭐ 39
unit-testing for a collection of jupyter notebooks using nbconvert
dependent packages 1total releases 2latest release January 24, 2019most recent commit 3 years agopypi testipynb} Downloads
The 10 Latest Releases In Reproducible Science Open Source Projects
Hydra Zen ⭐ 236
Create powerful Hydra applications without the yaml files and boilerplate code.
dependent packages 5total releases 61latest release November 27, 2023most recent commit a day agopypi hydra-zen} Downloads
Nextflow ⭐ 2,221
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 12 hours ago
Sacred ⭐ 4,112
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
dependent packages 33total releases 29latest release November 13, 2023most recent commit 21 days agopypi sacred} Downloads
Pystow ⭐ 31
👜 Easily pick a place to store data for your Python code.
dependent packages 45total releases 51latest release November 07, 2023most recent commit a month agopypi pystow} Downloads
Itk Wasm ⭐ 166
High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures
dependent packages 25total releases 23latest release September 29, 2023most recent commit 4 days agopypi itkwasm} Downloads
Aspecd ⭐ 6
Python framework for handling spectroscopic data focussing on reproducibility
dependent packages 4total releases 21latest release September 08, 2023most recent commit 2 months agopypi aspecd} Downloads
Showyourwork ⭐ 488
A workflow for reproducible and open scientific articles
total releases 29latest release August 03, 2023most recent commit 13 days ago
Unmap ⭐ 11
Unmap data from a pseudocolor image, with or without knowing the colormap.
total releases 7latest release November 27, 2022most recent commit 8 months ago
Bash Workbench ⭐ 9
BASH Workbench
total releases 15latest release September 30, 2022most recent commit a year ago
Popular Science Categories
Physics
Genome
Medical
Scientific
Evolution
Dna
Molecule
Sequencing
Astronomy
Genomics
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2023 Awesome Open Source.  All rights reserved.