The Top 162 Reproducible Science Open Source Projects

Awesome Open Source

Awesome Open Source

Share On Twitter

Combined Topics

reproducible-science x

The Top 162 Reproducible Science Open Source Projects

Categories > Science > Reproducible Science

Sacred ⭐ 3,843

Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.

dependent packages 25total releases 27most recent commit 8 days ago

pypi sacred} Downloads

Singularity ⭐ 2,340

Singularity has been EOL'ed, see Apptainer

dependent packages 2total releases 60most recent commit 14 days ago

Nextflow ⭐ 1,770

A DSL for data-driven computational pipelines

dependent packages 15total releases 203most recent commit 3 days ago

Rescience ⭐ 625

The ReScience journal. Reproducible Science is Good. Replicated Science is better.

most recent commit a year ago

Rrtools ⭐ 570

rrtools: Tools for Writing Reproducible Research in R

most recent commit a month ago

Workflow Description Language - Specification and Implementations

total releases 20most recent commit 3 months ago

Showyourwork ⭐ 291

Fully reproducible, open source scientific articles in LaTeX.

total releases 18most recent commit 6 hours ago

Containerit ⭐ 270

Package an R workspace and all dependencies as a Docker container

most recent commit 5 months ago

Reprozip ⭐ 256

ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.

dependent packages 6total releases 29most recent commit 2 months ago

pypi reprounzip} Downloads

Future Gadget Laboratory

most recent commit 4 years ago

Awesome Reproducible Research ⭐ 196

A curated list of reproducible research case studies, projects, tutorials, and media

most recent commit 7 days ago

🐳 Containerize R Markdown documents for continuous reproducibility

most recent commit 7 months ago

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

most recent commit 2 years ago

Itk Wasm ⭐ 126

High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures

dependent packages 11total releases 66most recent commit 3 days ago

npm itk} Downloads

Cmip6_preprocessing ⭐ 119

Analysis ready CMIP6 data in python the easy way with pangeo tools.

total releases 10most recent commit 4 days ago

Datadeps.jl ⭐ 111

reproducible data setup for reproducible science

most recent commit 4 days ago

Everware ⭐ 111

Everware is about re-useable science, it allows people to jump right in to your research code.

most recent commit 4 years ago

dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).

most recent commit 8 months ago

Vistrails ⭐ 92

VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.

most recent commit 5 years ago

Hydra Zen ⭐ 85

Configurable, reproducible, and scalable Python programs, via Hydra

dependent packages 1total releases 29most recent commit 13 days ago

pypi hydra-zen} Downloads

Analysis Flow ⭐ 70

Data Analysis Workflows & Reproducibility Learning Resources

most recent commit a year ago

Tcpdbench ⭐ 67

The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data

most recent commit 4 months ago

Fgmachine ⭐ 66

Future Gadget Machine

most recent commit 4 years ago

MoSQITo is a unified and modular development framework of key sound quality metrics favoring reproducible science and efficient shared scripting among engineers, teachers and researchers community.

total releases 17most recent commit 13 days ago

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

most recent commit 2 years ago

SEER, reimplemented in python 🐍🔮

total releases 18most recent commit a day ago

Ten Simple Rules Dockerfiles ⭐ 45

Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science

most recent commit 2 years ago

🔬 Empirical CLI

total releases 14most recent commit 2 years ago

Reproducible Audio Research ⭐ 43

List of Reproducible Audio Research Papers

most recent commit 4 years ago

Analysispreservation.cern.ch ⭐ 41

Source code for the CERN Analysis Preservation portal

most recent commit 5 days ago

Testipynb ⭐ 39

unit-testing for a collection of jupyter notebooks using nbconvert

dependent packages 1total releases 2most recent commit 2 years ago

pypi testipynb} Downloads

Lecture notes (in IPython Notebook format) on Reproducible Science And Modern Scientific Software

most recent commit 7 years ago

Copernic ⭐ 35

Versioned structured data, with change-request mechanic, at scale.

most recent commit a year ago

Reproducibilidad ⭐ 30

Reproducible Science: what, why, how

most recent commit 3 years ago

Literate Programming ⭐ 28

This is the repository for the Literate Programming Workshop

most recent commit a year ago

Prodigenr ⭐ 27

Project directory generator R package

total releases 7most recent commit a year ago

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

most recent commit a year ago

Reproducible Science ⭐ 26

material for teaching reproducible science with R and RStudio

most recent commit a year ago

Openscience ⭐ 25

Empirical Software Engineering journal (EMSE) open science and reproducible research initiative

most recent commit 3 months ago

Researchcompendium ⭐ 24

NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach

most recent commit 5 years ago

Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads

most recent commit 2 months ago

Better Science Code ⭐ 23

A presentation on best coding/data management practices based on my own experiences of scientific computing and data analysis and heavily borrowing from the recommendations of many others. View presentation at: https://edeno.github.io/Better-Science-Code

most recent commit 5 years ago

Supernnova ⭐ 20

Open Source Photometric classification https://supernnova.readthedocs.io

most recent commit a month ago

Ngs Preprocess ⭐ 20

A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies

most recent commit 2 months ago

Csv_wrangling ⭐ 19

Repository for reproducibility of the CSV file project

most recent commit 5 months ago

Repro_web_stack ⭐ 19

The stack I use to make reproducible reports of my statistical analyses

most recent commit 4 years ago

Programming for Cognitive and Brain Sciences (code and lectures notes for the Cogmaster's PCBS course)

most recent commit 2 months ago

Improve Repro Workflow Reproducibilitea 2020 ⭐ 17

most recent commit 2 years ago

Continuously-integrated Open-source Reproducible TeX

most recent commit 3 years ago

Papers As Modules ⭐ 17

Software Papers as Software Modules: Towards a Culture of Reusable Results

most recent commit 4 years ago

Reproducibility_in_plant_pathology ⭐ 16

A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathology research reproducibility and suggestions for ways to improving it.

most recent commit 12 hours ago

Manuscript ⭐ 15

This repository implements an automated system to write our collaborative manuscript, while tracking changes and contributions.

most recent commit 7 days ago

Seamless ⭐ 15

Seamless is a framework to set up computations (and visualizations) that respond to changes in cells. Cells contain the input data as well as the source code of the computations, and all cells can be edited interactively.

most recent commit a day ago

seminar series on data science, reproducible science and open source by @maxheld83

most recent commit 2 years ago

Reprozip Examples ⭐ 13

Examples and demos for ReproZip

most recent commit 7 months ago

Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!

total releases 5most recent commit 6 months ago

Reproducibility News ⭐ 12

Currated reproducibility news displayed on reproducibility.org

most recent commit 2 months ago

R10e Ds Py ⭐ 12

Reproducible Data Science in Python (SciPy 2019 Tutorial)

most recent commit 2 years ago

Computation ⭐ 12

notebooks and tutorials on computation in geophysics

most recent commit a year ago

Single Cell Papers With Code ⭐ 12

Papers with code for single cell related papers

most recent commit 7 months ago

Learn to work more efficiently on empirical research projects.

most recent commit 5 hours ago

Oss 2017 ⭐ 11

OSS2017 - Open Science for Synthesis: Gulf Research Program

most recent commit 3 years ago

Msc Data Skills ⭐ 11

Materials for MSc Data Skills course

most recent commit 10 months ago

Reproducible Science In R ⭐ 11

This site provides information on conducting reproducible science using the R language.

most recent commit 6 years ago

Cyverse Sdk ⭐ 10

A resource for CyVerse developers

most recent commit 2 years ago

Sclerotinia 366 ⭐ 9

Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"

most recent commit 4 years ago

Architecture ⭐ 9

Architecture and overarching documentation for o2r microservices

most recent commit a year ago

Awesome Reproducible R ⭐ 9

An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.

most recent commit 3 years ago

Import spectral data and related metadata in R

most recent commit a day ago

R package to simplify workflows of D6 research projects. The package provides utilities to set up a standardized folder structure and version control, and Rmarkdown templates and rendering functionality for a reproducible workflow.

most recent commit 4 months ago

Quantitative Big Imaging 2019 ⭐ 8

The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2019

most recent commit 2 years ago

Git Training ⭐ 8

Git/GitFlow training

most recent commit a year ago

Reproducible Research Practices Workshop ⭐ 8

Workshop on reproducible research practices for psychologists

most recent commit 2 months ago

Bash Workbench ⭐ 7

most recent commit a month ago

Simple_workflow ⭐ 7

A very simple, re-executable neuroimaging publication (code)

most recent commit 5 months ago

Repro_eval ⭐ 7

A Python Interface to Reproducibility Measures of System-Oriented IR Experiments

most recent commit 5 months ago

Reproducible Research Guidelines ⭐ 6

Guidelines for accountable and reproducible computational research

most recent commit 2 years ago

Reproducible research code for the experiments presented in our article "Kara1k: a karaoke dataset for cover song identification and singing voice analysis" published at IEEE ISM 2017

most recent commit 4 years ago

Clean Water Tool ⭐ 6

Reporting Tool to Support Safe Drinking Water in California’s Disadvantaged Communities

most recent commit 3 years ago

Code for Probabilistic Sequential Matrix Factorization

most recent commit a year ago

Reproducible Science Workshop ⭐ 6

Material for a workshop on reproducible science with R and RStudio

most recent commit a month ago

Module 3 Reproducible Research And Data Analysis ⭐ 6

Module 3: Reproducible Research and Data Analysis

most recent commit 3 years ago

📷 R package that supports the analysis of images annotations 📷

most recent commit 5 years ago

Ctv Computational Environments ⭐ 5

A CRAN task view for computational environments and reproducibility

most recent commit 3 years ago

Abra Collaboratory ⭐ 5

git reproducible - version control your ideas

most recent commit 3 years ago

Reproduce_open_data_materials_and_code ⭐ 5

Materials for Session 5 of Re:produce workshop

most recent commit 2 years ago

Course_website ⭐ 5

Material for Software Best Practice course

most recent commit 3 years ago

Open Reproducible Biology Workshop 2014 @ TGAC

most recent commit 8 years ago

Single_cell_clustering_notebook ⭐ 4

most recent commit 3 years ago

Extremely Open, Extremely Reproducible Astronomy on deep learning on galaxy images for colors

most recent commit 4 years ago

Simple checkpointed Python scripting framework for Gromacs

most recent commit 6 years ago

Reproducible_science ⭐ 3

Introduction: towards reproducible science using version control and GNU R

most recent commit 10 months ago

Code used in the article "SATIN: A Persistent Musical Database for Music Information Retrieval" by Yann Bayle, Pierre Hanna and Matthias Robine in CBMI 2017. SATIN is a MIR dataset for reproducible research.

most recent commit 4 years ago

Configurable and scalable 16S metagenomics data analysis

most recent commit 4 years ago

Rmarkdown_workshop ⭐ 3

most recent commit 2 months ago

Rmarkdown Intro ⭐ 3

Introduction to R Markdown

most recent commit 3 years ago

Reproducible Research And Giscience ⭐ 3

Ready to use R Markdown notebook for the paper "Reproducible research and GIScience: an evaluation using AGILE conference papers"

most recent commit 3 years ago

Docker Workshop ⭐ 3

Docker Workshop

most recent commit 4 years ago

Grading Reproducibility In Remote Sensing Articles ⭐ 3

Position Paper for the J-STARS Special Issue on Reproducible Research in Remote Sensing

most recent commit 2 years ago

Intro_rmarkdown ⭐ 3

Write reproducible and dynamic documents - Introduction to R Markdown

most recent commit 2 years ago

1-100 of 162 projects

Categories

Advertising 📦 8

Application Programming Interfaces 📦 107

Applications 📦 174

Artificial Intelligence 📦 69

Blockchain 📦 66

Build Tools 📦 105

Cloud Computing 📦 68

Code Quality 📦 24

Collaboration 📦 27

Command Line Interface 📦 38

Community 📦 79

Companies 📦 60

Compilers 📦 59

Computer Science 📦 73

Configuration Management 📦 37

Content Management 📦 153

Control Flow 📦 187

Data Formats 📦 72

Data Processing 📦 249

Data Storage 📦 116

Economics 📦 56

Frameworks 📦 178

Graphics 📦 92

Hardware 📦 137

Integrated Development Environments 📦 43

Learning Resources 📦 139

Libraries 📦 117

Lists Of Projects 📦 19

Machine Learning 📦 313

Mapping 📦 57

Marketing 📦 15

Mathematics 📦 54

Messaging 📦 96

Networking 📦 292

Operating Systems 📦 71

Operations 📦 114

Package Managers 📦 50

Programming Languages 📦 173

Runtime Environments 📦 90

Science 📦 42

Security 📦 343

Social Media 📦 23

Software Architecture 📦 65

Software Development 📦 60

Software Performance 📦 53

Software Quality 📦 115

Text Editors 📦 40

Text Processing 📦 118

User Interface 📦 291

User Interface Components 📦 440

Version Control 📦 26

Virtualization 📦 63

Web Browsers 📦 35

Web Servers 📦 23

Web User Interface 📦 167

Top Programming Languages

Javascript (1,061,137)

Python (808,558)

Typescript (247,243)

C Plus Plus (239,108)

Shell (171,423)

C Sharp (164,357)

Golang (158,480)

Objective C (57,177)

Kotlin (46,566)

Matlab (31,193)

Language (30,054)

Haskell (20,389)

Clojure (19,147)

Powershell (19,051)

Coffeescript (17,289)

Elixir (16,657)

Assembly (14,701)

Processing (13,306)

Emacs Lisp (10,424)

Solidity (8,013)

Fortran (5,550)

Common Lisp (5,304)

Shell Script (4,656)

Python Library (4,457)

Crystal (4,386)

Scripting (4,209)

Top Projects

Freecodecamp ⭐ 348,462

996.icu ⭐ 262,763

Free Programming Books ⭐ 238,208

Coding Interview University ⭐ 223,024

Awesome ⭐ 206,565

Developer Roadmap ⭐ 199,094

Public Apis ⭐ 198,920

Vue ⭐ 197,419

React ⭐ 190,823

System Design Primer ⭐ 184,236

Tensorflow ⭐ 166,177

Bootstrap ⭐ 158,311

You Dont Know Js ⭐ 153,649

Cs Notes ⭐ 151,618

Ohmyzsh ⭐ 147,138

Build Your Own X ⭐ 146,712

Javascript Algorithms ⭐ 144,783

Flutter ⭐ 142,365

Python ⭐ 139,465

Gitignore ⭐ 134,906

Linux ⭐ 134,141

Vscode ⭐ 133,610

Awesome Python ⭐ 132,376

Javascript ⭐ 124,360

Javaguide ⭐ 124,178

Python 100 Days ⭐ 120,315

Computer Science ⭐ 118,096

Youtube Dl ⭐ 111,218

Fucking Algorithm ⭐ 107,431

The Art Of Command Line ⭐ 106,741

React Native ⭐ 103,611

Electron ⭐ 102,379

30 Seconds Of Code ⭐ 96,728

Create React App ⭐ 95,778

Axios ⭐ 94,331

Free Programming Books Zh_cn ⭐ 93,999

Awesome Selfhosted ⭐ 93,372

Kubernetes ⭐ 89,876

Next.js ⭐ 89,087

Node ⭐ 88,556

Terminal ⭐ 83,848

Deno ⭐ 83,660

Awesome Go ⭐ 83,348

Three.js ⭐ 83,330

Angular ⭐ 82,456

Typescript ⭐ 81,969

Ant Design ⭐ 80,939

Material Ui ⭐ 79,477

Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2022 Awesome Open Source. All rights reserved.