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The Top 23 Proteomics Open Source Projects

Open source projects categorized as Proteomics
Categories > Proteomics
Mscoreutils ⭐ 16
Core Utils for Mass Spectrometry Data
most recent commit 3 months ago
Pride Inspector ⭐ 15
PRIDE Inspector is a Java desktop application to visualise and Quality Assessment on Mass Spectrometry data and Proteomics
most recent commit 2 years ago
Enrich_omics ⭐ 15
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
most recent commit 5 months ago
Rformassspectrometry ⭐ 15
The R for Mass Spectrometry meta-package
most recent commit 4 months ago
Morpheus ⭐ 15
Morpheus mass spectrometry–based proteomics database search algorithm
most recent commit 4 years ago
Iq ⭐ 15
An R package to estimate relative protein abundances from ion quantification in DIA-MS-based proteomics
most recent commit 5 months ago
Normalyzerde ⭐ 14
Tools for normalization, evaluation of outliers, technical biases and batch effects and differential expression analysis.
most recent commit 8 months ago
Meta Proteome Analyzer ⭐ 14
MetaProteomeAnalyzer (MPA) software for analyzing and visualizing MS-based metaproteomics data.
most recent commit 4 years ago
Geckopy ⭐ 14
Enzyme-constrained genome-scale models in python
most recent commit 6 months ago
Omics ⭐ 14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
most recent commit 5 months ago
Kineticlearning ⭐ 13
Learning Kinetic Models from Time Series Proteomics and Metabolomics Data
most recent commit 4 years ago
Artms ⭐ 13
Analytical R Tools for Mass Spectrometry
most recent commit 10 months ago
Bacnet ⭐ 12
BACNET is a Java based platform to develop website for multi-omics analysis
most recent commit a year ago
Pfind3 ⭐ 12
most recent commit 5 years ago
Crosslink Viewer ⭐ 12
web based visualisation of CLMS data
most recent commit a year ago
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22most recent commit 4 months agopypi sdrf-pipelines} Downloads
Mspire ⭐ 11
mass spectrometry proteomics in ruby
dependent packages 7total releases 70most recent commit 10 years agorubygems mspire} Downloads
Pomashiny ⭐ 11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
most recent commit a year ago
Mmtf Proteomics ⭐ 11
Methods for mapping proteomics data on 3D protein structure.
most recent commit 4 years ago
Feser ⭐ 11
feseR: Combining feature selection methods for analyzing omics data
most recent commit 3 years ago
Proloc ⭐ 11
A unifying bioinformatics framework for organelle proteomics
most recent commit a year ago
Pcprophet ⭐ 11
Framework for systematic discovery of novel complexes and differential analysis of cofractionation MS datasets
most recent commit 2 years ago
Isoprot ⭐ 11
Protocol of the analysis of iTRAQ/TMT proteomics data including quantification, statistical analysis and maybe clustering
most recent commit 5 years ago
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