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The Top 11 Proteomics Data Open Source Projects

Open source projects categorized as Proteomics Data
Categories > Proteomics Data
Msnbase ⭐ 115
Base Classes and Functions for Mass Spectrometry and Proteomics
most recent commit 4 months ago
Rforproteomics ⭐ 69
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
most recent commit a year ago
Ursgal ⭐ 37
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
most recent commit 2 years ago
Rawtools ⭐ 35
RawTools is an open-source and freely available package designed to perform scan data parsing and quantification, and quality control analysis of Thermo Orbitrap raw mass spectrometer files from data-dependent acquisition experiments.
most recent commit 2 years ago
Mzlib ⭐ 23
Library for mass spectrometry projects
dependent packages 2total releases 467most recent commit 4 months agonuget mzLib} Downloads
Proloc ⭐ 11
A unifying bioinformatics framework for organelle proteomics
most recent commit a year ago
Irs_normalization ⭐ 9
An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.
most recent commit 5 years ago
Tmt_analysis_examples ⭐ 7
Examples of TMT data analyses using R. Links to notebooks and repositories. Also a few spectral counting analyses.
most recent commit 4 years ago
Proteomic Data Manager ⭐ 5
Proteomic Data Manager is a Web-based integrated plateform to combine data storage/backup, process and visualization of MS-based Proteomics data.
most recent commit 7 months ago
Coxlab_bug_reporting ⭐ 5
MaxQuant and Perseus Bug Reporting
most recent commit 6 months ago
Proteinclusterquant ⭐ 5
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
most recent commit 8 months ago
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