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The Top 23 Python Protein Open Source Projects

Open source projects categorized as Python Protein
Categories > Protein
Deepdrug3d ⭐ 46
A convolutional neural network for classifying binding pockets based on spatial and chemical information extracted from the pockets.
most recent commit 3 years ago
Agfusion ⭐ 46
Python package to annotate and visualize gene fusions.
dependent packages 1total releases 38most recent commit a year agopypi agfusion} Downloads
Mmterm ⭐ 46
View proteins and trajectories in the terminal
most recent commit 4 years ago
Prothint ⭐ 45
Protein hint generation pipeline for gene finding in eukaryotic genomes
most recent commit 6 months ago
Ilearn ⭐ 45
iLearn, a Python Toolkit and Web Server Integrating the Functionality of Feature Calculation, Extraction, Clustering, Feature Selection, Feature Normalization, Dimension Reduction and Model Construction for Classification, Best Model Selection, Ensemble Learning and Result Visualization for DNA, RNA and Protein Sequences.
most recent commit 3 years ago
Deepgo ⭐ 45
Function prediction using a deep ontology-aware classifier
most recent commit 3 years ago
Vae_protein_function ⭐ 44
Protein function prediction using a variational autoencoder
most recent commit 6 years ago
Paired_cell_inpainting ⭐ 44
Self-supervised learning for microscopy images
most recent commit 5 years ago
Ensembler ⭐ 44
Automated omics-scale protein modeling and simulation setup.
most recent commit 3 years ago
Cell2cell ⭐ 44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
most recent commit 5 months ago
Deepconv Dti ⭐ 43
DeepConv-DTI: Prediction of drug-target interactions via deep learning with convolution on protein sequences
most recent commit 2 years ago
Rxdock ⭐ 43
RxDock is a fork of rDock. Note: the latest code is under development. Please do git checkout patched-rdock after clone if you want patched rDock. [IMPORTANT NOTE: pull requests should be posted on GitLab, this is a read-only source code mirror]
most recent commit 2 years ago
Prismnet ⭐ 41
Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure
most recent commit 8 months ago
Pfeature ⭐ 41
A software package for computing features of peptides and proteins
total releases 5most recent commit 8 months ago
Microbeannotator ⭐ 41
Pipeline for metabolic annotation of microbial genomes
total releases 10most recent commit 2 years ago
Deepmind Alphafold Repl ⭐ 40
https://github.com/deepmind/deepmind-research
most recent commit 5 years ago
Smina Docking Benchmark ⭐ 40
most recent commit 2 years ago
Osprey3 ⭐ 40
Open Source Protein REdesign for You v3
most recent commit 6 months ago
Deepaccnet ⭐ 40
Pytorch/Python3 implementation of DeepAccNet, protein model accuracy evaluator.
most recent commit 3 years ago
Qligfep ⭐ 39
most recent commit 6 months ago
Macsyfinder ⭐ 38
MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.
total releases 10most recent commit 4 months ago
Protlearn ⭐ 38
A Python package for extracting protein sequence features
total releases 17most recent commit 2 years ago
Holoprot ⭐ 37
Multi-Scale Representation Learning on Proteins (NeurIPS 2021)
most recent commit 10 months ago
The 10 Latest Releases In Python Protein Open Source Projects
Thermoprot ⭐ 7
Predict protein thermostability with ML
total releases 1latest release July 22, 2019most recent commit a year ago
Rosettasilenttoolbox ⭐ 6
Python Toolbox For Rosetta Silent Files Processing
total releases 9latest release July 19, 2019most recent commit 4 years ago
Kegg ⭐ 9
A Bio2BEL package for integrating pathway-related information from KEGG in BEL
dependent packages 2total releases 22latest release July 01, 2019most recent commit 2 years agopypi bio2bel-kegg} Downloads
Spada ⭐ 7
⚔️Find splicing-led, functional changes of the proteome.
total releases 55latest release April 30, 2019most recent commit 5 years ago
Reactomepy ⭐ 19
Explore biomolecular pathways in Reactome from the command-line or a Python script
total releases 9latest release April 15, 2019most recent commit 5 months ago
Viralrecall ⭐ 12
Detection of NCLDV signatures in 'omic data
total releases 1latest release March 25, 2019most recent commit 3 years ago
Ppaxe ⭐ 5
Text mining tool to retrieve protein-protein interactions from the scientific literature.
total releases 4latest release March 22, 2019most recent commit 5 years ago
Photon ⭐ 11
PHOsphoproteomic dissecTiOn using Networks
total releases 11latest release March 06, 2019most recent commit 5 years ago
Cazy Parser ⭐ 11
A way to extract specific information from CAZy
total releases 7latest release February 12, 2019most recent commit 7 months ago
Cocoscore ⭐ 14
CoCoScore: context-aware co-occurrence scores for text mining applications
total releases 3latest release January 25, 2019most recent commit 5 years ago
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