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The Top 23 Protein Structure Open Source Projects

Open source projects categorized as Protein Structure
Categories > Protein Structure
Bio3d ⭐ 15
A mirror of official bio3d development site at Bitbucket: https://bitbucket.org/Grantlab/bio3d. See also bio3d website: http://thegrantlab.org/bio3d
most recent commit a year ago
Siteinterlock ⭐ 15
A novel approach to pose selection in protein-ligand docking based on graph theory.
most recent commit 8 years ago
Jupyterlabpymolpysnips ⭐ 14
Python snippets for PyMOL to be run in Jupyterlab via the jupyterlab-snippets-multimenus extension.
most recent commit 7 months ago
De Stress ⭐ 13
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
most recent commit 10 months ago
Emerald ⭐ 13
EMERALD calculates safety-windows by exploring the suboptimal alignment space
most recent commit 5 months ago
Cbh21 Protein Solubility Challenge ⭐ 13
Template with code & dataset for the "Structural basis for solubility in protein expression systems" challenge at the Copenhagen Bioinformatics Hackathon 2021.
most recent commit 3 years ago
Lightdock Rust ⭐ 13
A Rust implementation of the LightDock macromolecular docking software
most recent commit a year ago
Funfoldesdata ⭐ 12
Rosetta FunFolDes – a general framework for the computational design of functional proteins.
most recent commit 5 years ago
Fmol ⭐ 12
A simplified drug discovery pipeline -- generating SMILE molecular with AlphaSMILES, predicting protein structure with AlphaFold, and checking the druggability with fpocket/Amber.
most recent commit 3 years ago
Ramachandraw ⭐ 12
Ramachandran plotting tool
total releases 5most recent commit a year ago
Brewery ⭐ 12
State-of-the-art ab initio prediction of 1D protein structure annotations
most recent commit 3 years ago
Pmi ⭐ 12
Python Modeling Interface
most recent commit 5 months ago
Proteinsolver ⭐ 12
Graph neural network capable of generating novel amino acid sequences that fold into proteins with predetermined topologies.
most recent commit 3 years ago
Esmpair ⭐ 12
Bib'23: Improved the Heterodimer Protein Complex Prediction with Protein Language Models
most recent commit 6 months ago
Prankwebapp ⭐ 11
Web application for protein-ligand binding sites analysis and visualization
most recent commit a year ago
Alphafold Peptide Receptors ⭐ 11
Identifying peptide-receptor interactions using AlphaFold-Multimer
most recent commit 8 months ago
Korpm ⭐ 11
Predicting the effect of mutations on protein stability using a simple orientational potential.
most recent commit 9 months ago
Allopred ⭐ 11
Predict allosteric pockets on proteins
most recent commit 2 years ago
Hotmaps ⭐ 10
Detects hotspot regions for somatic mutations in 3D protein structures
most recent commit 6 years ago
Equivariant Nn Zoo ⭐ 10
A library for building equivariant neural networks and a zoo of implementations & examples.
most recent commit 2 years ago
Portein ⭐ 10
2D portraits of 3D protein structures
most recent commit 5 months ago
Pose ⭐ 10
A bare metal Python library for building and manipulating protein molecular structures
most recent commit 6 months ago
Sword2 ⭐ 10
SWift and Optimized Recognition of protein Domains
most recent commit a year ago
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