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The Top 23 Pipeline Slurm Open Source Projects

Open source projects categorized as Pipeline Slurm
Categories > Data Processing > Pipeline
Categories > Slurm
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250most recent commit 3 months ago
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528most recent commit 3 months agopypi toil} Downloads
Juicer ⭐ 313
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
most recent commit a year ago
Torchx ⭐ 275
TorchX is a universal job launcher for PyTorch applications. TorchX is designed to have fast iteration time for training/research and support for E2E production ML pipelines when you're ready.
dependent packages 4total releases 728most recent commit 3 months agopypi torchx-nightly} Downloads
Drake Examples ⭐ 58
Example workflows for the drake R package
most recent commit 2 years ago
Ensembl Hive ⭐ 50
EnsEMBL Hive - a system for creating and running pipelines on a distributed compute resource
most recent commit 3 months ago
Slurm Pipeline ⭐ 47
A Python class for scheduling SLURM jobs
total releases 51most recent commit 4 months ago
Soopervisor ⭐ 42
☁️ Export Ploomber pipelines to Kubernetes (Argo), Airflow, AWS Batch, SLURM, and Kubeflow.
total releases 25most recent commit 3 months ago
Pipelines Nextflow ⭐ 41
A set of workflows written in Nextflow for Genome Annotation.
most recent commit 3 months ago
Jobschedulers.jl ⭐ 37
A Julia-based job scheduler and workload manager inspired by Slurm, PBS and Crontab.
most recent commit 3 months ago
Wochenende ⭐ 30
Deprecated see https://github.com/MHH-RCUG/nf_wochenende : A whole Genome/Metagenome Sequencing Alignment Pipeline in Python3
most recent commit 2 years ago
Covalent Slurm Plugin ⭐ 26
Executor plugin interfacing Covalent with Slurm
total releases 4most recent commit 3 months ago
Maliampi ⭐ 19
Maximum Likelihood Amplicon Pipeline
total releases 1most recent commit 7 months ago
Ngspipe2go ⭐ 19
a set of NGS pipelines
most recent commit 7 months ago
Rnaseq Pipeline ⭐ 18
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
most recent commit 3 months ago
Poretally ⭐ 15
Benchmark MinION assembler pipelines and publish your results in a heartbeat!
most recent commit 4 years ago
Graphtyper Pipelines ⭐ 13
Recommended Graphtyper pipelines
most recent commit 3 years ago
Pipelines ⭐ 11
most recent commit 10 months ago
Variant Calling Pipeline ⭐ 11
HPC based pipelines for variant calling using GATK
most recent commit 4 years ago
Jenlib ⭐ 10
Jenlib is a shared library offering various helpers and abstractions for Jenkins CI instances.
most recent commit 3 months ago
Bioluigi ⭐ 9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
total releases 20most recent commit 6 months ago
Nextflow_pipelines ⭐ 8
The set of NGS processing pipelines used at Babraham
most recent commit 3 months ago
Dada2_guidelines ⭐ 8
A repository with a general dada2 pipeline for amplicon processing
most recent commit 4 months ago
The 3 Most Depended On Pipeline Slurm Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
The 8 Latest Releases In Pipeline Slurm Open Source Projects
Nextflow ⭐ 2,447
A DSL for data-driven computational pipelines
dependent packages 16total releases 250latest release November 24, 2023most recent commit 3 months ago
Bioluigi ⭐ 9
Reusable and maintained Luigi tasks to incorporate in bioinformatics pipelines
total releases 20latest release October 03, 2023most recent commit 6 months ago
Toil ⭐ 860
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
dependent packages 12total releases 528latest release July 27, 2023most recent commit 3 months agopypi toil} Downloads
Soopervisor ⭐ 42
☁️ Export Ploomber pipelines to Kubernetes (Argo), Airflow, AWS Batch, SLURM, and Kubeflow.
total releases 25latest release June 09, 2022most recent commit 3 months ago
Covalent Slurm Plugin ⭐ 26
Executor plugin interfacing Covalent with Slurm
total releases 4latest release May 26, 2022most recent commit 3 months ago
Slurm Pipeline ⭐ 47
A Python class for scheduling SLURM jobs
total releases 51latest release May 22, 2022most recent commit 4 months ago
Maliampi ⭐ 19
Maximum Likelihood Amplicon Pipeline
total releases 1latest release April 19, 2019most recent commit 7 months ago
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