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The Top 23 R Pipeline Open Source Projects

Open source projects categorized as R Pipeline
Cinar ⭐ 10
A differential and enrichment analyses pipeline for bulk ATAC-seq (and RNA-seq)
total releases 4most recent commit 2 years ago
Ripe ⭐ 10
rerun {magrittr} pipelines
total releases 1most recent commit 4 years ago
Rflow ⭐ 10
Flexible R Pipelines with Caching
most recent commit 6 years ago
Forecastframework ⭐ 9
Create modular models. Quickly prototype models whose input includes (multiple) time series data. Create pieces of model use cases separately, and swap out particular models as desired. Create modeling competitions, data processing pipelines, and re-useable models.
most recent commit 5 years ago
Secretsanta ⭐ 9
flexible pipelines for scalable secretome prediction, R package
most recent commit 5 years ago
Gcap ⭐ 9
GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data and absolute copy number profiles
most recent commit 3 months ago
Eeg_to_erp_pipeline_stats_r ⭐ 9
General pipeline used for analyzing EEG data where Raw EEG data gets transformed into ERPS and Stats are done in R (Mixed effects models)
most recent commit 5 months ago
Smart ⭐ 9
Semi-manual alignment to reference templates (SMART): An open source pipeline in R for whole brain mapping
most recent commit 3 years ago
Rna Seq ⭐ 9
RNA-seq analysis scripts
most recent commit 2 years ago
Gimpute ⭐ 9
An efficient genetic data imputation pipeline
most recent commit 2 years ago
Dada2_guidelines ⭐ 8
A repository with a general dada2 pipeline for amplicon processing
most recent commit 4 months ago
Poma ⭐ 8
📦 Tools for Omics Data Analysis
most recent commit 3 months ago
Dnaseq_pipeline ⭐ 8
Pipeline in place at the UGI for DNA level analysis
most recent commit 8 years ago
Bmo ⭐ 8
BMO - a tool for predicting TF binding from ATAC-seq data
most recent commit 2 years ago
Splicify ⭐ 8
most recent commit 6 years ago
Rescue ⭐ 8
Bootstrap imputation for scRNAseq data
total releases 1most recent commit 4 years ago
Comms Rs ⭐ 8
A library for building DSP communication pipelines.
most recent commit 2 years ago
Trna ⭐ 8
tRNA gene regulation downstream analysis
most recent commit 8 years ago
Eems Around The World ⭐ 8
Repo to analyze population genetic data with many different methods
most recent commit 5 years ago
Seqprocess ⭐ 8
SEQprocess: a modularized and customizable pipeline framework for NGS processing in R package
most recent commit 4 years ago
Nba Attendance Prediction ⭐ 7
Attendance prediction tool for NBA games using machine learning. Full pipeline implemented in Python from data ingestion to prediction. Attained mean absolute error of around 800 people (about 5% capacity) on test set.
most recent commit a year ago
Aa_subtypes ⭐ 7
Code for the MSB publication: Exploring amino acid functions and positional subtypes in a deep mutational landscape
most recent commit 2 years ago
Rnasum ⭐ 7
Pipeline for generating RNAseq-based cancer patient reports
most recent commit 4 months ago
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