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The Top 23 Pipeline Protein Open Source Projects

Open source projects categorized as Pipeline Protein
Categories > Data Processing > Pipeline
Categories > Protein
Bio_embeddings ⭐ 357
Get protein embeddings from protein sequences
total releases 1most recent commit a year ago
Pgap ⭐ 263
NCBI Prokaryotic Genome Annotation Pipeline
most recent commit 3 months ago
Entap ⭐ 30
Eukaryotic Non-Model Transcriptome Annotation Pipeline - Latest Release v1.0.1
most recent commit 4 months ago
Bitacora ⭐ 27
BITACORA: A Bioinformatics tool for gene family annotation
most recent commit 5 months ago
Long Read Proteogenomics ⭐ 26
A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.
most recent commit a year ago
Metasanity ⭐ 24
Pipeline for major biological analyses.
most recent commit 3 years ago
Limma Pipeline Proteomics ⭐ 21
LIMMA (an empirical Bayes method) pipeline for two group comparison in a proteomic experiment
most recent commit 5 months ago
Crisprdisco ⭐ 21
CRISPR discovery pipeline
most recent commit 5 years ago
Paw_pipeline ⭐ 18
A Comet-based, best practices proteomics pipeline.
most recent commit 2 years ago
Shotmap ⭐ 17
A Shotgun Metagenome Annotation Pipeline
most recent commit 7 years ago
Pcons Fold ⭐ 16
Pipeline for protein folding using PconsC and Rosetta
most recent commit 6 years ago
Sars Cov 2 Proteins ⭐ 16
most recent commit 4 years ago
De Stress ⭐ 13
DE-STRESS is a model evaluation pipeline that aims to make protein design more reliable and accessible.
most recent commit 9 months ago
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22most recent commit 4 months agopypi sdrf-pipelines} Downloads
Proxl Web App ⭐ 11
ProXL Web App -- Visualize and Share Protein Cross-linking Data
most recent commit 10 months ago
Gomap Singularity ⭐ 10
GOMAP-Singularity is the containerized version of GOMAP
most recent commit 9 months ago
Paccmann_sarscov2 ⭐ 9
Code for paper on automation of discovery and synthesis of targeted molecules: https://iopscience.iop.org/article/10.1088/2632-21
most recent commit 3 years ago
Fgmp ⭐ 9
Fungal Genome Mapping Pipeline
most recent commit 5 years ago
Secretsanta ⭐ 9
flexible pipelines for scalable secretome prediction, R package
most recent commit 5 years ago
Fa Nf ⭐ 9
Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow
most recent commit 2 years ago
Phylostratigraphy ⭐ 9
Pipeline for Phylostratigraphy
most recent commit a year ago
Poap ⭐ 8
Parallelized Open Babel & Autodock suite Pipeline
most recent commit 6 years ago
Multiphate2 ⭐ 8
multiPhATE with comparative genomics
most recent commit 3 years ago
The 3 Latest Releases In Pipeline Protein Open Source Projects
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 4 months agopypi sdrf-pipelines} Downloads
Bio_embeddings ⭐ 357
Get protein embeddings from protein sequences
total releases 1latest release February 14, 2022most recent commit a year ago
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