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The Top 23 Phylogenetics Open Source Projects

Open source projects categorized as Phylogenetics
Categories > Phylogenetics
Bioinformatics Toolbox ⭐ 10
Docker container for bioinformatics tools and pipelines
most recent commit 4 months ago
Whale.jl ⭐ 10
Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation
most recent commit 2 years ago
Grampa ⭐ 10
Gene-tree Reconciliation Algorithm with MUL-trees for Polyploid Analysis
most recent commit a year ago
Elynx ⭐ 9
Analyze, modify and simulate molecular sequence data and phylogenetic trees in a reproducible way.
total releases 24most recent commit 9 months ago
Ncov Clades Schema ⭐ 9
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
most recent commit 5 months ago
Clockor2 ⭐ 9
Inferring global and local strict molecular clocks using root-to-tip regression
most recent commit 4 months ago
Cdao ⭐ 9
Comparative Data Analysis Ontology - A formalization of concepts and relations relevant to evolutionary comparative analysis
most recent commit a year ago
Trisicell ⭐ 9
Scalable tumor phylogeny inference and validation from single-cell RNA or DNA data
total releases 25most recent commit 5 months ago
Light_phylogeny ⭐ 9
Light phylogeny API for Rust
dependent packages 4total releases 81most recent commit 4 months agocargo light_phylogeny} Downloads
Graphphylo ⭐ 9
visualization of phylogenetic output files
most recent commit 7 months ago
Rappas ⭐ 9
Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences
most recent commit 5 months ago
Course R Mol Data ⭐ 8
R is nowadays probably the most powerful tool for calculations of all kinds. There are plenty of modules available for work with molecular data. Those will be introduced during the course.
most recent commit 4 months ago
Phylogenetics ⭐ 8
CRAN Task View: Phylogenetics
most recent commit 4 months ago
Captus ⭐ 8
Assembly of Phylogenomic Datasets from High-Throughput Sequencing data
most recent commit 4 months ago
Teiphy ⭐ 8
A Python package for converting TEI XML collations to NEXUS and other formats
total releases 7most recent commit 5 months ago
Supermatrix ⭐ 8
scripts to process, join, split, or add new proteins to a supermatrix alignment using hmms
most recent commit 6 months ago
Newicktree.jl ⭐ 8
Newick formatted (phylogenetic) trees
most recent commit 4 months ago
Thirdkind ⭐ 8
Drawing reconciled phylogenetic trees allowing 1, 2 or 3 reconcillation levels
total releases 68most recent commit 4 months ago
Rncl ⭐ 8
An R interface to the Nexus Class Library (C++) to read in quickly large phylogenetic trees and data
dependent packages 2total releases 8most recent commit a year ago
Sensiphy ⭐ 8
R package to perform sensitivity analysis for comparative methods
total releases 7most recent commit 4 years ago
Kleuren ⭐ 8
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
most recent commit 5 years ago
Aphylogeo ⭐ 7
aPhyloGeo is a multiplatform application for the analysis of genetic and climatic conditions.
most recent commit 4 months ago
Linearham ⭐ 7
A Bayesian Phylo-HMM for B cell receptor sequence analysis
most recent commit a year ago
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