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The Top 18 Phasing Open Source Projects

Open source projects categorized as Phasing
Categories > Phasing
Octopus ⭐ 285
Bayesian haplotype-based mutation calling
most recent commit 10 months ago
Princess ⭐ 74
most recent commit a year ago
Vcf Simplify ⭐ 45
A python parser to simplify and build the VCF (Variant Call Format).
most recent commit 4 years ago
Clairs ⭐ 42
ClairS - a deep-learning method for long-read somatic small variant calling
most recent commit 5 months ago
Subphaser ⭐ 40
Phase, partition and visualize subgenomes of an allopolyploid or hybrid based on the subgenome-specific repetitive kmers.
most recent commit 7 months ago
Nphase ⭐ 39
Ploidy agnostic phasing pipeline and algorithm
total releases 27most recent commit 6 months ago
Shapeit5 ⭐ 38
Segmented HAPlotype Estimation and Imputation Tool
most recent commit 9 months ago
Hiphase ⭐ 37
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
most recent commit 7 months ago
Deploid ⭐ 18
dEploid is designed for deconvoluting mixed genomes with unknown proportions. Traditional ‘phasing’ programs are limited to diploid organisms. Our method modifies Li and Stephen’s algorithm with Markov chain Monte Carlo (MCMC) approaches, and builds a generic framework that allows haloptype searches in a multiple infection setting.
most recent commit 2 years ago
Minorseq ⭐ 14
Minor Variant Calling and Phasing Tools
most recent commit 2 years ago
Indelpost ⭐ 11
Python library for simple and complex indels.
dependent packages 2total releases 17most recent commit 5 months agopypi indelpost} Downloads
Microphaser ⭐ 11
most recent commit 2 years ago
Gwaspy ⭐ 10
GWAS QC, PCA, haplotype phasing, genotype imputation
most recent commit 5 months ago
Gimpute ⭐ 9
An efficient genetic data imputation pipeline
most recent commit 2 years ago
Project Diploid Assembly ⭐ 8
Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data
most recent commit 2 years ago
Strainflye ⭐ 7
Pipeline for analyzing (rare) mutations in metagenome-assembled genomes
most recent commit 9 months ago
Phimtools ⭐ 6
A phasing and imputation pipeline for NGS data
most recent commit 2 years ago
Imputation Ukb Ref Panel ⭐ 5
Genotype imputation pipelines for the UK Biobank Research Analysis Platform
most recent commit 7 months ago
The 2 Latest Releases In Phasing Open Source Projects
Indelpost ⭐ 11
Python library for simple and complex indels.
dependent packages 2total releases 17latest release October 10, 2022most recent commit 5 months agopypi indelpost} Downloads
Nphase ⭐ 39
Ploidy agnostic phasing pipeline and algorithm
total releases 27latest release April 21, 2022most recent commit 6 months ago
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