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The Top 23 Pdb Protein Structure Open Source Projects

Open source projects categorized as Pdb Protein Structure
Categories > Protein Structure
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5most recent commit 3 months agopypi molecularnodes} Downloads
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20most recent commit 7 months agopypi biopandas} Downloads
Biojava ⭐ 564
📖🔬☕ BioJava is an open-source project dedicated to providing a Java library for processing biological data.
dependent packages 16total releases 56most recent commit 3 months ago
Plip ⭐ 320
Protein-Ligand Interaction Profiler - Analyze and visualize non-covalent protein-ligand interactions in PDB files according to 📝 Adasme et al. (2021), https://doi.org/10.1093/nar/gkab294
dependent packages 1total releases 25most recent commit 8 months agopypi plip} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18most recent commit 9 months agopypi pypdb} Downloads
P2rank ⭐ 193
P2Rank: Protein-ligand binding site prediction tool based on machine learning. Stand-alone command line program / Java library for predicting ligand binding pockets from protein structure.
most recent commit 3 months ago
Deeplytough ⭐ 115
DeeplyTough: Learning Structural Comparison of Protein Binding Sites
most recent commit 2 years ago
Proteinsecondarystructure Cnn ⭐ 93
Protein Secondary Structure predictor using Convolutional Neural Networks
most recent commit 9 months ago
Biostructures.jl ⭐ 77
A Julia package to read, write and manipulate macromolecular structures (particularly proteins)
most recent commit 4 months ago
Mitos.jl ⭐ 64
Mutual Information Tools for protein Sequence analysis in Julia
most recent commit 3 months ago
Vscoding Sequence ⭐ 56
VSCode Extension for interactively visualising protein structure data in the editor
most recent commit a year ago
Ramanet ⭐ 31
Preforms De novo protein design using machine learning and PyRosetta to generate a novel protein structure
most recent commit 2 years ago
Molart ⭐ 31
MOLeculAR structure annoTator
dependent packages 2total releases 39most recent commit 7 months agonpm molart} Downloads
Libcifpp ⭐ 26
Library containing code to manipulate mmCIF and PDB files
most recent commit 4 months ago
Pdbcolor ⭐ 24
Python code to color a PDB structure based on parameters from a multiple sequence alignment
most recent commit 8 months ago
Glycosylator ⭐ 23
Framework for the rapid modeling glycans and glycoproteins.
most recent commit 7 months ago
Chem.cr ⭐ 22
Library for dealing with computational chemistry files
most recent commit 4 months ago
Proteinensembles.jl ⭐ 21
Generate and perturb protein structural ensembles using the ExProSE algorithm
most recent commit 6 months ago
Getpdb ⭐ 20
Download pdb/protein structures from Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicates(Optional, maybe lost some conformation changed structures) and save as "UniprotID-PDBID-ModelID-ChainID.pdb/cif".
most recent commit 6 months ago
Lightdock Python2.7 ⭐ 20
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
most recent commit 4 years ago
Hpdb ⭐ 19
PDB parser in Haskell
total releases 22most recent commit 5 years ago
Mmtf Spark ⭐ 19
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
most recent commit 5 years ago
Michelanglo App ⭐ 17
A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site
most recent commit a year ago
The 6 Most Depended On Pdb Protein Structure Open Source Projects
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 7 months agopypi biopandas} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Molart ⭐ 31
MOLeculAR structure annoTator
dependent packages 2total releases 39latest release November 14, 2022most recent commit 7 months agonpm molart} Downloads
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
The 10 Latest Releases In Pdb Protein Structure Open Source Projects
Molecularnodes ⭐ 729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
dependent packages 1total releases 5latest release December 05, 2023most recent commit 3 months agopypi molecularnodes} Downloads
Biopandas ⭐ 673
Working with molecular structures in pandas DataFrames
dependent packages 20total releases 20latest release August 28, 2023most recent commit 7 months agopypi biopandas} Downloads
Pypdb ⭐ 258
A Python API for the RCSB Protein Data Bank (PDB)
dependent packages 5total releases 18latest release July 24, 2023most recent commit 9 months agopypi pypdb} Downloads
Molart ⭐ 31
MOLeculAR structure annoTator
dependent packages 2total releases 39latest release November 14, 2022most recent commit 7 months agonpm molart} Downloads
Ramachandraw ⭐ 12
Ramachandran plotting tool
total releases 5latest release December 03, 2020most recent commit a year ago
Patoz ⭐ 8
Protein Data Bank (pdb) file parser
total releases 1latest release April 28, 2020most recent commit 2 years ago
Biographs ⭐ 5
Python class to easily deal with protein networks.
total releases 1latest release January 02, 2020most recent commit 4 years ago
Hpdb ⭐ 19
PDB parser in Haskell
total releases 22latest release July 16, 2018most recent commit 5 years ago
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