Awesome Open Source
Awesome Open Source
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The Top 38 Open Science Open Source Projects
Categories
>
Science
>
Open Science
Fma
⭐
1,437
FMA: A Dataset For Music Analysis
Itk
⭐
821
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Pyvista
⭐
797
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
Awesome Open Geoscience
⭐
713
Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome
Zenodo
⭐
554
Research. Shared.
Anonymous_github
⭐
509
Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.
Openml
⭐
498
Open Machine Learning
Opendata.cern.ch
⭐
425
Source code for the CERN Open Data portal
Ck
⭐
407
Collective Knowledge framework (CK) helps to organize GitHub projects, Docker images and Jupyter Notebooks as a database of reusable components and micro-services with common APIs, automation actions and extensible meta descriptions based on FAIR principles. See real-world use cases from Arm, GM, the Raspberry Pi foundation, ACM and MLPerf:
Anahita
⭐
370
Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networking foundation.
Itkwidgets
⭐
356
Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
Repairnator
⭐
350
Software development bot that automatically repairs build failures on continuous integration. Join the bot revolution! 🌟🤖🌟💞
Food Inspections Evaluation
⭐
318
This repository contains the code to generate predictions of critical violations at food establishments in Chicago. It also contains the results of an evaluation of the effectiveness of those predictions.
Simpeg
⭐
292
Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
Otb
⭐
271
Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb
Open Computational Neuroscience Resources
⭐
255
A publicly-editable collection of open computational neuroscience resources
Tomviz
⭐
236
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
Pycbc
⭐
183
Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.
Avogadrolibs
⭐
174
Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
Snpr
⭐
158
The sources of the openSNP website
Electrophysiologydata
⭐
152
A list of openly available datasets in (mostly human) electrophysiology.
Headstart
⭐
141
A framework for creating web-based knowledge maps
Code Is Science
⭐
133
Scientific code needs to be open source and peer reviewed
Osfr
⭐
119
R interface to the Open Science Framework (OSF)
Serratus
⭐
98
Ultra-deep search for novel viruses
Reproducible Research
⭐
96
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
Dcmjs
⭐
94
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
Helm Charts
⭐
89
Kubernetes Helm Charts for the Center for Open Science
Awesome Open Science Software
⭐
88
awesome open list of pointers about open science for software and computational science
Obofoundry.github.io
⭐
86
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
Openml R
⭐
82
R package to interface with OpenML
Open Science Resources
⭐
63
A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
Module 5 Open Research Software And Open Source
⭐
62
Module 5: Open Research Software and Open Source
Electrophysiologysoftware
⭐
55
A list of openly available software tools for (mostly human) electrophysiology.
Autode
⭐
52
automated reaction profile generation
Doathon
⭐
45
Our discussion forum (see "issues") for the OpenCon Do-A-Thon, a day of trying, making, testing and doing to advance Open Research & Education. See our full website, with more information (including Github Help, and how to get involved).
Itksphinxexamples
⭐
39
Cookbook examples for the Insight Toolkit documented with Sphinx
Meta Review
⭐
36
Manuscript describing open collaborative writing with Manubot
1-38 of 38 projects
Advertising
📦 10
All Projects
Application Programming Interfaces
📦 124
Applications
📦 192
Artificial Intelligence
📦 78
Blockchain
📦 73
Build Tools
📦 113
Cloud Computing
📦 80
Code Quality
📦 28
Collaboration
📦 32
Command Line Interface
📦 49
Community
📦 83
Companies
📦 60
Compilers
📦 63
Computer Science
📦 80
Configuration Management
📦 42
Content Management
📦 175
Control Flow
📦 213
Data Formats
📦 78
Data Processing
📦 276
Data Storage
📦 135
Economics
📦 64
Frameworks
📦 215
Games
📦 129
Graphics
📦 110
Hardware
📦 152
Integrated Development Environments
📦 49
Learning Resources
📦 166
Legal
📦 29
Libraries
📦 129
Lists Of Projects
📦 22
Machine Learning
📦 347
Mapping
📦 64
Marketing
📦 15
Mathematics
📦 55
Media
📦 239
Messaging
📦 98
Networking
📦 315
Operating Systems
📦 89
Operations
📦 121
Package Managers
📦 55
Programming Languages
📦 245
Runtime Environments
📦 100
Science
📦 42
Security
📦 396
Social Media
📦 27
Software Architecture
📦 72
Software Development
📦 72
Software Performance
📦 58
Software Quality
📦 133
Text Editors
📦 49
Text Processing
📦 136
User Interface
📦 330
User Interface Components
📦 514
Version Control
📦 30
Virtualization
📦 71
Web Browsers
📦 42
Web Servers
📦 26
Web User Interface
📦 210
