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The Top 534 Open Science Open Source Projects

Categories > Science > Open Science
Wowchemy Hugo Themes ⭐ 6,849
🔥 Hugo website builder, Hugo themes & Hugo CMS. No code, easily build with blocks! 创建在线课程，学术简历或初创网站。#OpenScience
most recent commit 4 days ago
Zotero Scihub ⭐ 1,774
A plugin that will automatically download PDFs of zotero items from sci-hub
most recent commit a month ago
Pyvista ⭐ 1,571
3D plotting and mesh analysis through a streamlined interface for the Visualization Toolkit (VTK)
dependent packages 99total releases 60most recent commit 6 hours agopypi pyvista} Downloads
Fma ⭐ 1,506
FMA: A Dataset For Music Analysis
most recent commit a year ago
Itk ⭐ 1,115
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
dependent packages 2total releases 4most recent commit 3 days ago
Awesome Open Geoscience ⭐ 1,017
Curated from repositories that make our lives as geoscientists, hackers and data wranglers easier or just more awesome
most recent commit a month ago
Anonymous_github ⭐ 850
Anonymous Github is a proxy server to support anonymous browsing of Github repositories for open-science code and data.
most recent commit a month ago
Zenodo ⭐ 748
Research. Shared.
most recent commit 3 days ago
Osf.io ⭐ 631
Facilitating Open Science
most recent commit 2 days ago
Openml ⭐ 565
Open Machine Learning
most recent commit 17 days ago
Grass ⭐ 558
GRASS GIS - free and open source Geographic Information System (GIS)
most recent commit 7 hours ago
Opendata.cern.ch ⭐ 550
Source code for the CERN Open Data portal
most recent commit 6 hours ago
Itkwidgets ⭐ 480
Interactive Jupyter widgets to visualize images, point sets, and meshes in 2D and 3D
dependent packages 12total releases 81most recent commit 11 days agopypi itkwidgets} Downloads
Anahita ⭐ 407
Anahita is a platform and framework for developing open science and knowledge sharing applications on a social networking foundation.
dependent packages 3total releases 50most recent commit 25 days agopackagist anahita/anahita} Downloads
Simpeg ⭐ 385
Simulation and Parameter Estimation in Geophysics - A python package for simulation and gradient based parameter estimation in the context of geophysical applications.
most recent commit 9 days ago
Transform To Open Science ⭐ 378
Transformation to Open Science
most recent commit 2 days ago
Open Computational Neuroscience Resources ⭐ 373
A publicly-editable collection of open computational neuroscience resources
most recent commit 14 days ago
Repairnator ⭐ 364
Software development bots for Github. Join the bot revolution! 🌟🤖🌟💞
total releases 7most recent commit 3 months ago
Otb ⭐ 296
Github mirror of https://gitlab.orfeo-toolbox.org/orfeotoolbox/otb
most recent commit 4 days ago
Food Inspections Evaluation ⭐ 281
This repository contains the code to generate predictions of critical violations at food establishments in Chicago. It also contains the results of an evaluation of the effectiveness of those predictions.
most recent commit 4 years ago
Tomviz ⭐ 281
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
total releases 16most recent commit 2 months ago
Avogadrolibs ⭐ 278
Avogadro libraries provide 3D rendering, visualization, analysis and data processing useful in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
total releases 8most recent commit 8 days ago
Pycbc ⭐ 261
Core package to analyze gravitational-wave data, find signals, and study their parameters. This package was used in the first direct detection of gravitational waves (GW150914), and is used in the ongoing analysis of LIGO/Virgo data.
dependent packages 7total releases 113most recent commit 3 days agopypi PyCBC} Downloads
Electrophysiologydata ⭐ 216
A list of openly available datasets in (mostly human) electrophysiology.
most recent commit 8 days ago
Serratus ⭐ 188
Ultra-deep search for novel viruses
most recent commit 6 months ago
Pvgeo ⭐ 166
🌍 Python package of VTK-based algorithms to analyze geoscientific data and models
total releases 68most recent commit 3 months ago
Moltemplate ⭐ 165
A general cross-platform tool for preparing simulations of molecules and complex molecular assemblies
total releases 108most recent commit 8 hours ago
Headstart ⭐ 164
A framework for creating web-based knowledge maps
most recent commit 8 days ago
Snpr ⭐ 162
The sources of the openSNP website
most recent commit 2 days ago
Crowdai ⭐ 145
Fighting for Open Science with Open Data
most recent commit 9 months ago
Itk Wasm ⭐ 141
High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures
dependent packages 13total releases 66most recent commit 12 days agonpm itk} Downloads
Code Is Science ⭐ 136
Scientific code needs to be open source and peer reviewed
most recent commit 17 days ago
Pynwb ⭐ 134
A Python API for working with Neurodata stored in the NWB Format
dependent packages 67total releases 30most recent commit 17 hours agopypi pynwb} Downloads
Datadeps.jl ⭐ 125
reproducible data setup for reproducible science
most recent commit 22 days ago
Osfr ⭐ 123
R interface to the Open Science Framework (OSF)
most recent commit 2 months ago
Avogadroapp ⭐ 122
Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science, and related areas.
most recent commit 3 days ago
Obofoundry.github.io ⭐ 119
Metadata and website for the Open Bio Ontologies Foundry Ontology Registry
most recent commit 4 days ago
Ember Osf Web ⭐ 117
Ember front-end for the Open Science Framework
most recent commit a month ago
Autode ⭐ 115
automated reaction profile generation
total releases 14most recent commit 14 days ago
Perses ⭐ 115
Experiments with expanded ensembles to explore chemical space
total releases 9most recent commit 11 days ago
Simon Frontend ⭐ 114
💹 SIMON is powerful, flexible, open-source and easy to use machine learning knowledge discovery platform 💻
most recent commit 10 days ago
Awesome Open Science ⭐ 114
some links to projects/tools related to "open science".
most recent commit 5 years ago
Expyriment ⭐ 103
Platform-independent lightweight Python library for designing and conducting timing-critical behavioural and neuroimaging experiments
most recent commit 4 days ago
Awesome Open Science Software ⭐ 102
awesome open list of pointers about open science for software and computational science
most recent commit a month ago
Helm Charts ⭐ 100
Kubernetes Helm Charts for the Center for Open Science
most recent commit 5 days ago
Earthaccess ⭐ 98
Python client for NASA CMR
most recent commit 2 days ago
Dcmjs ⭐ 97
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
most recent commit a year ago
Reproducible Research ⭐ 95
A Reproducible Data Analysis Workflow with R Markdown, Git, Make, and Docker
most recent commit 2 years ago
Openpmd Api ⭐ 93
💾 C++ & Python API for Scientific I/O
dependent packages 3total releases 40most recent commit 6 days agopypi openPMD-api} Downloads
Share ⭐ 92
SHARE is building a free, open, data set about research and scholarly activities across their life cycle.
most recent commit 3 months ago
Openml R ⭐ 90
R package to interface with OpenML
dependent packages 1total releases 11most recent commit a month ago
Expandar ⭐ 88
R Package for Interactive Panel Data Exploration
total releases 7most recent commit 2 years ago
Hitchhackers_guide_brain ⭐ 86
A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG
most recent commit 2 years ago
Continuous_analysis ⭐ 82
Computational reproducibility using Continuous Integration to produce verifiable end-to-end runs of scientific analysis.
most recent commit 2 years ago
Hackathon2019 ⭐ 80
Website and projects for the OHBM Hackathon in Rome 2019
most recent commit 6 days ago
Osfclient ⭐ 79
A python library and command-line client for file storage on OSF
dependent packages 3total releases 5most recent commit 2 years agopypi osfclient} Downloads
Arco Era5 ⭐ 78
Recipes for reproducing Analysis-Ready & Cloud Optimized (ARCO) ERA5 datasets.
most recent commit a month ago
Blenditbayes ⭐ 76
Code used in my blog "Blend it like a Bayesian!"
most recent commit 8 years ago
Open Science Resources ⭐ 73
A publicly-editable collection of open science resources, including tools, datasets, meta-resources, etc.
most recent commit 4 months ago
Electrophysiologysoftware ⭐ 72
A list of openly available software tools for (mostly human) electrophysiology.
most recent commit 8 days ago
Voicelab ⭐ 69
Automated Reproducible Acoustical Analysis
total releases 3most recent commit 10 days ago
Module 5 Open Research Software And Open Source ⭐ 59
Module 5: Open Research Software and Open Source
most recent commit 3 years ago
Waterbutler ⭐ 58
WaterButler is a Python web application for interacting with various file storage services via a single RESTful API, developed at Center for Open Science.
most recent commit 5 months ago
Openpmd Standard ⭐ 57
📓 Open Standard for Particle-Mesh Data
most recent commit 9 months ago
Overview ⭐ 55
An overview of the OpenLists organization, and description of the available lists.
most recent commit 4 months ago
Open Solution Ship Detection ⭐ 55
Open solution to the Airbus Ship Detection Challenge
most recent commit 5 months ago
Clear Water ⭐ 53
Forecasting elevated levels of E. coli at Chicago beaches to provide proper warning to beach-goers.
most recent commit 2 years ago
Osrr_course ⭐ 52
The Open Science and Reproducible Research course
most recent commit 3 years ago
Itksphinxexamples ⭐ 51
Cookbook examples for the Insight Toolkit documented with Sphinx
most recent commit 13 days ago
Open Life Science.github.io ⭐ 50
A mentoring program for Open Life Science
most recent commit 2 days ago
Csstuff ⭐ 48
CS Stuff is an awesome collection of Computer Science Stuff.
most recent commit 4 months ago
Openpmd Viewer ⭐ 47
🐍 Python visualization tools for openPMD files
dependent packages 1total releases 25most recent commit 3 months agopypi openPMD-viewer} Downloads
Nwb Schema ⭐ 46
Data format specification schema for the NWB neurophysiology data format
most recent commit a month ago
Ten Simple Rules Dockerfiles ⭐ 45
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
most recent commit 2 years ago
Pem Dataset1 ⭐ 43
Proton Exchange Membrane (PEM) Fuel Cell Dataset
most recent commit 4 months ago
Doathon ⭐ 43
Our discussion forum (see "issues") for the OpenCon Do-A-Thon, a day of trying, making, testing and doing to advance Open Research & Education. See our full website, with more information (including Github Help, and how to get involved).
most recent commit 3 years ago
Isic Archive ⭐ 43
International Skin Imaging Collaboration: Melanoma Project
most recent commit 7 months ago
Open Science With R ⭐ 43
⛔️ [SUSPENDED] Writing the rOpenSci book on GitHub
most recent commit 4 years ago
Peerreview ⭐ 42
A diamond open access (free to access, free to publish), open source scientific and academic publishing platform.
most recent commit 12 days ago
Msk Staple ⭐ 41
STAPLE (Shared Tools for Automatic Personalised Lower Extremity modelling) consists of a collection of methods for generating skeletal models from three-dimensional bone geometries, usually segmented from medical images. The methods are currently being expanded to create complete musculoskeletal models.
most recent commit 4 days ago
Stringer Pachitariu Et Al 2018b ⭐ 40
Responses of 10,000 neurons to 2,800 natural images
most recent commit 3 years ago
Openmodelingfoundation.github.io ⭐ 39
Website for standards and governance of the Open Modeling Foundation
most recent commit a month ago
Open Notebook Science ⭐ 38
questo corso è stato pensato per gli studenti di Scienze Politiche dell'Università di Firenze. Questa sezione su github si concentra sull'utilizzo dell'ecosistema python per la Data Science. Slide del corso: https://docs.google.com/presentation/d/16WcexHHC8x
most recent commit 3 years ago
Rbien ⭐ 37
Tools for accessing the Botanical Information and Ecology Network (BIEN) database
most recent commit 16 days ago
Defects4j Dissection ⭐ 37
Defects4J Dissection presents data to help researchers and practitioners to better understand the Defects4J bug dataset
most recent commit a year ago
Prodigenr ⭐ 36
Project directory generator R package
total releases 7most recent commit 3 months ago
Covidregionaldata ⭐ 35
An interface to subnational and national level COVID-19 data. For all countries supported, this includes a daily time-series of cases. Wherever available we also provide data on deaths, hospitalisations, and tests. National level data is also supported using a range of data sources as well as linelist data and links to intervention data sets.
most recent commit 5 months ago
Hackthedeep ⭐ 34
The 4th Annual American Museum of Natural History Hackathon produced by the BridgeUP: STEM program
most recent commit 5 years ago
Opensciencetraining ⭐ 34
Course materials from the Open Science Training Initiative
most recent commit 2 years ago
Pydsge ⭐ 33
A package to simulate, filter, and estimate DSGE models with occasionally binding constraints
most recent commit a month ago
Open Science Training Handbook_en ⭐ 33
Main handbook content divided into chapters.
most recent commit a year ago
Working Open Workshop ⭐ 32
2016 repo to collect all materials and resources related to Mozilla Science Lab's Working Open Workshop
most recent commit 3 years ago
Meta Review ⭐ 32
Manuscript describing open collaborative writing with Manubot
most recent commit 3 years ago
Git Rdm ⭐ 32
A research data management plugin for the Git version control system.
most recent commit 5 years ago
Website ⭐ 31
Project Free Our Knowledge aims to organise collective action in support of open and reproducible research practices. This repository is used to design new campaigns (using the issues feature) and to build the website (www.freeourknowledge.org).
most recent commit 4 months ago
Awesome Utrecht University ⭐ 31
A curated list of awesome open source projects from Utrecht University.
most recent commit 5 months ago
Hackthestacks ⭐ 31
The 3rd Annual American Museum of Natural History Hackathon produced by the BridgeUP: STEM program
most recent commit 5 years ago
Hackthedinos ⭐ 31
The 2nd Annual American Museum of Natural History Hackathon produced by the BridgeUP: STEM program
most recent commit 4 years ago
Stringer Pachitariu Et Al 2018a ⭐ 31
Recordings of 10k neurons during spontaneous behaviors
most recent commit 4 years ago
B2share ⭐ 31
B2SHARE software for the EUDAT CDI services.
most recent commit a month ago
1-100 of 534 projects
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