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The Top 23 Omics Open Source Projects

Open source projects categorized as Omics
Categories > Omics
Mtrans ⭐ 622
Multi-source Translation
most recent commit 5 years ago
Awesome Omics ⭐ 536
A collection of awesome things regarding all omics.
most recent commit 5 months ago
Omicverse ⭐ 159
A python library for multi omics included bulk and single cell RNA-seq analysis.
dependent packages 2total releases 32most recent commit 5 months agopypi Pyomic} Downloads
Mixomics ⭐ 126
Development repository for the Bioconductor package 'mixOmics '
most recent commit 8 months ago
Omicsplayground ⭐ 112
Visual self-service analytics platform for big omics data.
most recent commit 5 months ago
Omiclearn ⭐ 50
🧪 🖥 Transparent exploration of machine learning for biomarker discovery from proteomics and omics data
most recent commit a year ago
Protti ⭐ 50
Picotti lab data analysis package.
total releases 7most recent commit 7 months ago
Voyager ⭐ 49
From geospatial to spatial -omics
most recent commit 6 months ago
Gneiss ⭐ 48
compositional data analysis toolbox
most recent commit a year ago
Ursgal ⭐ 37
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
most recent commit 2 years ago
Bidd Aggmap ⭐ 30
Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool
total releases 12most recent commit 9 months ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1most recent commit 10 months ago
Omicselector ⭐ 26
OmicSelector - Environment, docker-based application and R package for biomarker signiture selection (feature selection) & deep learning diagnostic tool development from high-throughput high-throughput omics experiments and other multidimensional datasets. Initially developed for miRNA-seq, RNA-seq and qPCR.
most recent commit a year ago
Omicnavigator ⭐ 21
Open-Source Software for Omic Data Analysis and Visualization
most recent commit 5 months ago
Omicspls ⭐ 20
R package for High dimensional data analysis and integration with O2PLS!
most recent commit 2 years ago
Omicsintegrator2 ⭐ 20
Prize-Collecting Steiner Forests for Interactomes
total releases 16most recent commit 5 years ago
Microbiomestat ⭐ 18
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
most recent commit 5 months ago
Muon.jl ⭐ 16
Muon for Julia
most recent commit a year ago
Enrich_omics ⭐ 15
A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)
most recent commit 6 months ago
Geckopy ⭐ 14
Enzyme-constrained genome-scale models in python
most recent commit 8 months ago
Hase ⭐ 14
Framework for efficient high-dimensional association analyses.
most recent commit 3 years ago
Omics ⭐ 14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
most recent commit 6 months ago
Pyiomica ⭐ 13
PyIOmica (pyiomica) is a Python package for omics analyses.
total releases 20most recent commit 2 years ago
The 6 Latest Releases In Omics Open Source Projects
Bidd Aggmap ⭐ 30
Jigsaw-like AggMap: A Robust and Explainable Multi-Channel Omics Deep Learning Tool
total releases 12latest release September 22, 2023most recent commit 9 months ago
Omicverse ⭐ 159
A python library for multi omics included bulk and single cell RNA-seq analysis.
dependent packages 2total releases 32latest release October 05, 2022most recent commit 5 months agopypi Pyomic} Downloads
Protti ⭐ 50
Picotti lab data analysis package.
total releases 7latest release July 01, 2022most recent commit 7 months ago
Pyiomica ⭐ 13
PyIOmica (pyiomica) is a Python package for omics analyses.
total releases 20latest release November 28, 2021most recent commit 2 years ago
Volcano3d ⭐ 28
An R package to plot interactive three-way differential expression analysis
total releases 1latest release June 04, 2020most recent commit 10 months ago
Omicsintegrator2 ⭐ 20
Prize-Collecting Steiner Forests for Interactomes
total releases 16latest release February 14, 2019most recent commit 5 years ago
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