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The Top 23 Neuroimaging Mri Open Source Projects

Open source projects categorized as Neuroimaging Mri
Categories > Mri
Categories > Machine Learning > Neuroimaging
Dcm2niix ⭐ 746
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dependent packages 2total releases 2most recent commit 3 months agopypi dcm2niix} Downloads
Freesurfer ⭐ 509
Neuroimaging analysis and visualization suite
most recent commit 3 months ago
Mriqc ⭐ 275
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
dependent packages 1total releases 104most recent commit 18 days agopypi mriqc} Downloads
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16most recent commit a year agopypi intensity-normalization} Downloads
Brainchop ⭐ 208
Brainchop: In-browser 3D MRI rendering and segmentation
most recent commit 4 months ago
Livianet ⭐ 133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
most recent commit 4 years ago
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64most recent commit 4 months agopypi smriprep} Downloads
Bidscoin ⭐ 110
BIDScoin converts your source-level neuroimaging data to BIDS
total releases 32most recent commit 3 months ago
Enigma ⭐ 101
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
most recent commit 5 months ago
Braingraph ⭐ 94
Graph theory analysis of brain MRI data
dependent packages 2total releases 11most recent commit 3 years ago
Hitchhackers_guide_brain ⭐ 86
A list of tutorials and other resources useful to learn open science and neuroimaging, EEG and MEG
most recent commit 3 years ago
Micapipe ⭐ 69
micapipe from the Multimodal imaging and connectome analysis lab (http://mica-mni.github.io) at the Montreal Neurological Institute. Read The Docs documentation below
most recent commit 3 months ago
Bidskit ⭐ 57
Utility functions for working with DICOM and BIDS neuroimaging data
total releases 27most recent commit 3 months ago
Fsbrain ⭐ 50
R library for structural neuroimaging. Provides high-level functions to access (read and write) and visualize surface-based brain morphometry data for individuals and groups.
total releases 16most recent commit 4 months ago
Bids Matlab ⭐ 47
MATLAB / Octave tools for BIDS datasets
most recent commit 3 months ago
Sepia ⭐ 41
Matlab GUI pipeline application for quantitative susceptibility mapping (QSM)
most recent commit 5 months ago
Ecobidas ⭐ 35
Working repository to turn the COBIDAS guidelines to report methods and results in neuroimaging into a user friendly checklist
most recent commit 3 months ago
Assemblynet ⭐ 31
AssemblyNet: 3D Whole Brain MRI segmentation pipeline
most recent commit 10 months ago
Brainconn ⭐ 30
Brainconn - an R package for visualising brain connectivity data in 2D and interactive 3D
most recent commit 3 months ago
Life ⭐ 29
Please use the new version of LiFE: www.github.com/brain-life/encode
most recent commit 7 years ago
Miracl ⭐ 29
Multi-modal Image Registration And Connectivity anaLysis
most recent commit 3 months ago
Tfce_mediation ⭐ 27
Fast regression and mediation analysis of vertex or voxel MRI data with TFCE
total releases 42most recent commit a year ago
Hippmapp3r ⭐ 27
AICONSlab's hippocampal segmentation algorithm using CNNs
most recent commit 10 months ago
The 6 Most Depended On Neuroimaging Mri Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Braingraph ⭐ 94
Graph theory analysis of brain MRI data
dependent packages 2total releases 11latest release September 29, 2020most recent commit 3 years ago
Dcm2niix ⭐ 746
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dependent packages 2total releases 2latest release July 15, 2022most recent commit 3 months agopypi dcm2niix} Downloads
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16latest release March 15, 2022most recent commit a year agopypi intensity-normalization} Downloads
Django_mri ⭐ 6
A reusable Django app to manage MRI data.
dependent packages 1total releases 4latest release December 03, 2019most recent commit a year agopypi django-mri} Downloads
Mriqc ⭐ 275
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
dependent packages 1total releases 104latest release June 14, 2023most recent commit 18 days agopypi mriqc} Downloads
The 10 Latest Releases In Neuroimaging Mri Open Source Projects
Smriprep ⭐ 111
Structural MRI PREProcessing (sMRIPrep) workflows for NIPreps (NeuroImaging PREProcessing tools)
dependent packages 4total releases 64latest release December 08, 2023most recent commit 4 months agopypi smriprep} Downloads
Bidscoin ⭐ 110
BIDScoin converts your source-level neuroimaging data to BIDS
total releases 32latest release October 30, 2023most recent commit 3 months ago
Bidskit ⭐ 57
Utility functions for working with DICOM and BIDS neuroimaging data
total releases 27latest release September 07, 2023most recent commit 3 months ago
Nigsp ⭐ 15
NiGSP: a module for graph signal processing on neuroimaging data
total releases 28latest release August 16, 2023most recent commit 4 months ago
Mriqc ⭐ 275
Automated Quality Control and visual reports for Quality Assessment of structural (T1w, T2w) and functional MRI of the brain
dependent packages 1total releases 104latest release June 14, 2023most recent commit 18 days agopypi mriqc} Downloads
React Fmri ⭐ 8
REACT: Receptor-Enriched Analysis of functional Connectivity by Targets
total releases 10latest release July 20, 2022most recent commit 8 months ago
Dcm2niix ⭐ 746
dcm2nii DICOM to NIfTI converter: compiled versions available from NITRC
dependent packages 2total releases 2latest release July 15, 2022most recent commit 3 months agopypi dcm2niix} Downloads
Intensity Normalization ⭐ 272
normalize the intensities of various MR image modalities
dependent packages 1total releases 16latest release March 15, 2022most recent commit a year agopypi intensity-normalization} Downloads
Braingraph ⭐ 94
Graph theory analysis of brain MRI data
dependent packages 2total releases 11latest release September 29, 2020most recent commit 3 years ago
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