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The Top 11 Neuroscience Microscopy Open Source Projects

Open source projects categorized as Neuroscience Microscopy
Categories > Microscopy
Categories > Science > Neuroscience
Cellfinder ⭐ 170
Automated 3D cell detection in very large images
dependent packages 2total releases 92most recent commit 21 days agopypi cellfinder} Downloads
Pytorch_connectomics ⭐ 151
PyTorch Connectomics: segmentation toolbox for EM connectomics
most recent commit 5 months ago
Brainreg ⭐ 103
Automated 3D brain registration with support for multiple species and atlases.
most recent commit 3 months ago
Bg Atlasapi ⭐ 97
A lightweight python module to interact with atlases for systems neuroscience
dependent packages 7total releases 9most recent commit 3 months agopypi bg-atlasapi} Downloads
Stitchit ⭐ 16
Stitching of large tiled datasets
most recent commit 9 days ago
Exllsm Circuit Reconstruction ⭐ 12
Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery
most recent commit 6 months ago
Vvdviewer ⭐ 11
3D/4D volumetric rendering of microscopy data
most recent commit 4 months ago
Brainreg Napari ⭐ 11
Automated 3D brain registration in napari with support for multiple species and atlases.
dependent packages 2total releases 11most recent commit 4 months agopypi brainreg-napari} Downloads
Neuro ⭐ 11
Visualisation and analysis of brain imaging data
dependent packages 3total releases 35most recent commit 3 years agopypi neuro} Downloads
Bakingtray ⭐ 6
Serial-section automated anatomy extension for ScanImage
most recent commit a year ago
Ara_tools ⭐ 6
Analysis of mouse brain STP data with respect to the Allen Reference Atlas
most recent commit 2 years ago
The 4 Most Depended On Neuroscience Microscopy Open Source Projects
Bg Atlasapi ⭐ 97
A lightweight python module to interact with atlases for systems neuroscience
dependent packages 7total releases 9latest release March 31, 2022most recent commit 3 months agopypi bg-atlasapi} Downloads
Neuro ⭐ 11
Visualisation and analysis of brain imaging data
dependent packages 3total releases 35latest release October 11, 2021most recent commit 3 years agopypi neuro} Downloads
Brainreg Napari ⭐ 11
Automated 3D brain registration in napari with support for multiple species and atlases.
dependent packages 2total releases 11latest release November 06, 2023most recent commit 4 months agopypi brainreg-napari} Downloads
Cellfinder ⭐ 170
Automated 3D cell detection in very large images
dependent packages 2total releases 92latest release November 06, 2023most recent commit 21 days agopypi cellfinder} Downloads
The 4 Latest Releases In Neuroscience Microscopy Open Source Projects
Cellfinder ⭐ 170
Automated 3D cell detection in very large images
dependent packages 2total releases 92latest release November 06, 2023most recent commit 21 days agopypi cellfinder} Downloads
Brainreg Napari ⭐ 11
Automated 3D brain registration in napari with support for multiple species and atlases.
dependent packages 2total releases 11latest release November 06, 2023most recent commit 4 months agopypi brainreg-napari} Downloads
Bg Atlasapi ⭐ 97
A lightweight python module to interact with atlases for systems neuroscience
dependent packages 7total releases 9latest release March 31, 2022most recent commit 3 months agopypi bg-atlasapi} Downloads
Neuro ⭐ 11
Visualisation and analysis of brain imaging data
dependent packages 3total releases 35latest release October 11, 2021most recent commit 3 years agopypi neuro} Downloads
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