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The Top 19 Proteomics Metabolomics Open Source Projects

Open source projects categorized as Proteomics Metabolomics
Categories > Metabolomics
Categories > Proteomics
Openms ⭐ 438
The codebase of the OpenMS project
dependent packages 22total releases 18most recent commit 3 months agopypi pyopenms} Downloads
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8most recent commit 3 months agopypi depthcharge-ms} Downloads
Datest ⭐ 34
Compare different differential abundance and expression methods
most recent commit 2 years ago
Metaboverse ⭐ 31
Visualization and analysis platform for metabolic data and network pattern recognition
most recent commit 5 months ago
Spectra ⭐ 29
Low level infrastructure to handle MS spectra
most recent commit 4 months ago
Pyqms ⭐ 26
pyQms, generalized, fast and accurate mass spectrometry data quantification
most recent commit 5 months ago
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70most recent commit 3 months agopypi nmdc-schema} Downloads
Qfeatures ⭐ 19
Quantitative features for mass spectrometry data
most recent commit 3 months ago
Mscoreutils ⭐ 16
Core Utils for Mass Spectrometry Data
most recent commit 3 months ago
Omics ⭐ 14
CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics
most recent commit 5 months ago
Pomashiny ⭐ 11
🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis
most recent commit a year ago
Protein Contaminant Libraries For Dda And Dia Proteomics ⭐ 9
This project is created by the Hao Lab at the Chemistry Department in George Washington University, Washington, D.C..(Publication pending) This project aims to provide contaminant protein FASTA and spectral libraries that can be universally applied to DDA and DIA proteomics and freely accessible for the proteomics community.
most recent commit a year ago
Pymultiomics ⭐ 9
Python toolbox for multi-omics data mapping and analysis
total releases 5most recent commit a year ago
Book ⭐ 7
R for Mass Spectrometry documentation
most recent commit 5 months ago
Motrpacbicqc ⭐ 6
R package for the MoTrPAC community
most recent commit 4 months ago
Reproduciblemsguidelines ⭐ 6
This project aims at defining a set of guidelines for reproducible mass spectrometry-based experiments.
most recent commit 7 months ago
Msquality ⭐ 6
most recent commit 4 months ago
Matrixqcvis ⭐ 5
most recent commit 9 months ago
Protgenerics ⭐ 5
S4 generic functions for Bioconductor mass spectrometry infrastructure
most recent commit 3 months ago
The 3 Most Depended On Proteomics Metabolomics Open Source Projects
Openms ⭐ 438
The codebase of the OpenMS project
dependent packages 22total releases 18latest release October 13, 2023most recent commit 3 months agopypi pyopenms} Downloads
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70latest release June 16, 2022most recent commit 3 months agopypi nmdc-schema} Downloads
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8latest release August 19, 2023most recent commit 3 months agopypi depthcharge-ms} Downloads
The 4 Latest Releases In Proteomics Metabolomics Open Source Projects
Openms ⭐ 438
The codebase of the OpenMS project
dependent packages 22total releases 18latest release October 13, 2023most recent commit 3 months agopypi pyopenms} Downloads
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8latest release August 19, 2023most recent commit 3 months agopypi depthcharge-ms} Downloads
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70latest release June 16, 2022most recent commit 3 months agopypi nmdc-schema} Downloads
Pymultiomics ⭐ 9
Python toolbox for multi-omics data mapping and analysis
total releases 5latest release March 24, 2022most recent commit a year ago
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