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The Top 23 Python Medical Open Source Projects

Open source projects categorized as Python Medical
Categories > Science > Medical
Monai ⭐ 5,010
AI Toolkit for Healthcare Imaging
dependent packages 48total releases 77most recent commit 3 months agopypi monai} Downloads
Qasystemonmedicalkg ⭐ 4,527
A tutorial and implement of disease centered Medical knowledge graph and qa system based on it。知识图谱构建，自动问答，基于kg的自动问答。以疾病为中心的一定规模医药领域知识图谱，并以该知识
most recent commit a year ago
Huatuo Llama Med Chinese ⭐ 3,776
Repo for BenTsao [original name: HuaTuo (华驼)], Instruction-tuning Large Language Models with Chinese Medical Knowledge. 本草（原名：华驼）模型仓库，基于中文医学知识的大语言模型指令微调
most recent commit 6 months ago
Medicalgpt ⭐ 2,127
MedicalGPT: Training Your Own Medical GPT Model with ChatGPT Training Pipeline. 训练医疗大模型，实现了包括增量预训练、有监督微调、RLHF(奖励建模、强化学习训练)和DPO(直接偏
most recent commit 3 months ago
Torchio ⭐ 1,904
Medical imaging toolkit for deep learning
dependent packages 29total releases 245most recent commit 3 months agopypi torchio} Downloads
3dunetcnn ⭐ 1,750
Pytorch 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation
most recent commit 3 months ago
Medicalnet ⭐ 1,648
Many studies have shown that the performance on deep learning is significantly affected by volume of training data. The MedicalNet project provides a series of 3D-ResNet pre-trained models and relative code.
most recent commit 10 months ago
Ssl4mis ⭐ 1,595
Semi Supervised Learning for Medical Image Segmentation, a collection of literature reviews and code implementations.
most recent commit 9 months ago
Dltk ⭐ 1,293
Deep Learning Toolkit for Medical Image Analysis
most recent commit 2 years ago
Mnssp3 ⭐ 1,272
most recent commit 4 years ago
Medicaldetectiontoolkit ⭐ 1,249
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
most recent commit 3 months ago
Niftynet ⭐ 1,170
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
most recent commit 4 years ago
Attention Gated Networks ⭐ 1,099
Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation
most recent commit 3 years ago
Unet Family ⭐ 1,029
Paper and implementation of UNet-related model.
most recent commit 4 years ago
Paperai ⭐ 1,023
📄 🤖 Semantic search and workflows for medical/scientific papers
total releases 13most recent commit 7 months ago
Medmnist ⭐ 903
[pip install medmnist] 18x Standardized Datasets for 2D and 3D Biomedical Image Classification
total releases 7most recent commit 3 months ago
Medicalzoopytorch ⭐ 896
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
most recent commit 2 years ago
Ctk ⭐ 755
A set of common support code for medical imaging, surgical navigation, and related purposes.
most recent commit 3 months ago
Medicaltorch ⭐ 724
A medical imaging framework for Pytorch
total releases 2most recent commit 3 years ago
Xrayglm ⭐ 577
🩺 首个会看胸部X光片的中文多模态医学大模型 | The first Chinese Medical Multimodal Model that Chest Radiographs Summarization.
most recent commit 7 months ago
Invesalius3 ⭐ 553
3D medical imaging reconstruction software
most recent commit 3 months ago
Pytorch Medical Segmentation ⭐ 536
This repository is an unoffical PyTorch implementation of Medical segmentation in 2D and 3D.
most recent commit 2 years ago
Medpy ⭐ 523
Medical image processing in Python
dependent packages 29total releases 6most recent commit 4 months agopypi MedPy} Downloads
The 10 Most Depended On Python Medical Open Source Projects
Monai ⭐ 5,010
AI Toolkit for Healthcare Imaging
dependent packages 48total releases 77latest release October 12, 2023most recent commit 3 months agopypi monai} Downloads
Torchio ⭐ 1,904
Medical imaging toolkit for deep learning
dependent packages 29total releases 245latest release November 24, 2023most recent commit 3 months agopypi torchio} Downloads
Medpy ⭐ 523
Medical image processing in Python
dependent packages 29total releases 6latest release February 14, 2019most recent commit 4 months agopypi MedPy} Downloads
Vertical Medical ⭐ 250
Open Source Healthcare System for Odoo
dependent packages 11total releases 5latest release September 17, 2017most recent commit 6 months agopypi odoo8-addon-medical} Downloads
Pydicom Seg ⭐ 54
Python package for DICOM-SEG medical segmentation file reading and writing
dependent packages 7total releases 8latest release December 21, 2021most recent commit a year agopypi pydicom-seg} Downloads
Metapub ⭐ 53
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
dependent packages 7total releases 115latest release January 09, 2020most recent commit 6 months agopypi metapub} Downloads
Medcat ⭐ 387
Medical Concept Annotation Tool
dependent packages 4total releases 327latest release October 13, 2023most recent commit 3 months agopypi medcat} Downloads
Platipy ⭐ 80
Processing Library and Analysis Toolkit for Medical Imaging in Python
dependent packages 3total releases 20latest release October 19, 2023most recent commit 4 months agopypi platipy} Downloads
Deid ⭐ 123
best effort anonymization for medical images using python
dependent packages 3total releases 73latest release September 11, 2023most recent commit 7 months agopypi deid} Downloads
Fhir Kindling ⭐ 12
HL7 FHIR client library. Sync and async crud operations against R4 FHIR servers. Resource validation & serialization
dependent packages 3total releases 37latest release September 13, 2023most recent commit 7 months agopypi fhir-kindling} Downloads
The 10 Latest Releases In Python Medical Open Source Projects
Mednlp ⭐ 9
Medical natural language parsing and utility library
dependent packages 1total releases 13latest release December 06, 2023most recent commit 3 months agopypi zensols.mednlp} Downloads
Edsnlp ⭐ 93
Modular, fast NLP framework, compatible with Pytorch and spaCy, offering tailored support for French clinical notes.
dependent packages 1total releases 23latest release December 04, 2023most recent commit 3 months agopypi edsnlp} Downloads
Deduce ⭐ 47
Deduce: de-identification method for Dutch medical text
dependent packages 1total releases 21latest release November 28, 2023most recent commit 3 months agopypi deduce} Downloads
Torchio ⭐ 1,904
Medical imaging toolkit for deep learning
dependent packages 29total releases 245latest release November 24, 2023most recent commit 3 months agopypi torchio} Downloads
Mirp ⭐ 29
Medical Image Radiomics Processor
total releases 1latest release October 27, 2023most recent commit 5 months ago
Platipy ⭐ 80
Processing Library and Analysis Toolkit for Medical Imaging in Python
dependent packages 3total releases 20latest release October 19, 2023most recent commit 4 months agopypi platipy} Downloads
Quickumls ⭐ 321
System for Medical Concept Extraction and Linking
dependent packages 1total releases 7latest release October 16, 2023most recent commit 6 months agopypi quickumls} Downloads
Medcat ⭐ 387
Medical Concept Annotation Tool
dependent packages 4total releases 327latest release October 13, 2023most recent commit 3 months agopypi medcat} Downloads
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