The Top 102 Medical Imaging Open Source Projects

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Combined Topics

medical-imaging x

Advertising 📦 10

Application Programming Interfaces 📦 124

Applications 📦 192

Artificial Intelligence 📦 78

Blockchain 📦 73

Build Tools 📦 113

Cloud Computing 📦 80

Code Quality 📦 28

Collaboration 📦 32

Command Line Interface 📦 49

Community 📦 83

Companies 📦 60

Compilers 📦 63

Computer Science 📦 80

Configuration Management 📦 42

Content Management 📦 175

Control Flow 📦 213

Data Formats 📦 78

Data Processing 📦 276

Data Storage 📦 135

Economics 📦 64

Frameworks 📦 215

Graphics 📦 110

Hardware 📦 152

Integrated Development Environments 📦 49

Learning Resources 📦 166

Libraries 📦 129

Lists Of Projects 📦 22

Machine Learning 📦 347

Mapping 📦 64

Marketing 📦 15

Mathematics 📦 55

Messaging 📦 98

Networking 📦 315

Operating Systems 📦 89

Operations 📦 121

Package Managers 📦 55

Programming Languages 📦 245

Runtime Environments 📦 100

Science 📦 42

Security 📦 396

Social Media 📦 27

Software Architecture 📦 72

Software Development 📦 72

Software Performance 📦 58

Software Quality 📦 133

Text Editors 📦 49

Text Processing 📦 136

User Interface 📦 330

User Interface Components 📦 514

Version Control 📦 30

Virtualization 📦 71

Web Browsers 📦 42

Web Servers 📦 26

Web User Interface 📦 210

The Top 102 Medical Imaging Open Source Projects

Categories > Science > Medical Imaging

Deep Learning Drizzle ⭐ 9,402

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

Awesome Gan For Medical Imaging ⭐ 1,709

Awesome GAN for Medical Imaging

Viewers ⭐ 1,598

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Cornerstone ⭐ 1,579

JavaScript library to display interactive medical images including but not limited to DICOM

Deep Learning For Medical Applications ⭐ 1,333

Deep Learning Papers on Medical Image Analysis

Niftynet ⭐ 1,287

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Deep Learning Toolkit for Medical Image Analysis

DICOM Web Viewer: open source zero footprint medical image library.

Medical Imaging Datasets ⭐ 1,206

A list of Medical imaging datasets.

Medicaldetectiontoolkit ⭐ 1,011

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

Torchio ⭐ 926

Medical image preprocessing and augmentation toolkit for deep learning. Part of the PyTorch Ecosystem.

Slicergitsvnarchive ⭐ 892

Multi-platform, free open source software for visualization and image computing.

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Deepmedic ⭐ 855

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

Medicaltorch ⭐ 739

A medical imaging framework for Pytorch

Fo Dicom ⭐ 710

Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

Medicalzoopytorch ⭐ 684

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Fastmri ⭐ 673

A large-scale dataset of both raw MRI measurements and clinical MRI images.

⚡High Performance DICOM Medical Image Parser in Go.

Breast_cancer_classifier ⭐ 642

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

All About The Gan ⭐ 631

All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN

Pyradiomics ⭐ 622

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

Kaggle_ndsb2017 ⭐ 604

Kaggle datascience bowl 2017

Robot Surgery Segmentation ⭐ 550

Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge

A set of common support code for medical imaging, surgical navigation, and related purposes.

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Learning Deep Learning ⭐ 451

Paper reading notes on Deep Learning and Machine Learning

Cornerstonetools ⭐ 437

A framework for tools built on top of Cornerstone.

U Net Brain Tumor ⭐ 424

U-Net Brain Tumor Segmentation

The Medical Imaging Interaction Toolkit.

Multi-platform, free open source software for visualization and image computing.

U-Net: Convolutional Networks for Biomedical Image Segmentation

Medical Datasets ⭐ 372

tracking medical datasets, with a focus on medical imaging

Weasis is a DICOM viewer available as a desktop application or as a web-based application.

Innereye Deeplearning ⭐ 336

Medical Imaging Deep Learning library to train and deploy models on Azure Machine Learning and Azure Stack

Lungmask ⭐ 320

Automated lung segmentation in CT

Medical Transformer ⭐ 311

Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021

Dataset ⭐ 309

医学影像数据集列表

Xvision ⭐ 306

Chest Xray image analysis using Deep learning !

Cascaded Fcn ⭐ 297

Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"

Pyimsegm ⭐ 266

Image segmentation - general superpixel segmentation & center detection & region growing

Dicoogle ⭐ 261

Dicoogle - Open Source PACS

Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm

Chexnet With Localization ⭐ 247

Weakly Supervised Learning for Findings Detection in Medical Images

Bccd_dataset ⭐ 233

BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

Neurite ⭐ 220

Neural networks toolbox focused on medical image analysis

Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow

A framework for GPU based high-performance medical image processing and visualization

RadIO is a library for data science research of computed tomography imaging

Visvis - the object oriented approach to visualization

Kiu Net Pytorch ⭐ 181

Official Pytorch Code of KiU-Net for Image Segmentation - MICCAI 2020 (Oral)

Staintools ⭐ 179

Tools for tissue image stain normalisation and augmentation in Python 3

Dicom Rs ⭐ 172

Pure Rust implementation of the DICOM standard

Javascript implementation of DICOM manipulation

Open Solution Data Science Bowl 2018 ⭐ 160

Open solution to the Data Science Bowl 2018

Iciar2018 ⭐ 157

Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)

Dicomviewer ⭐ 150

DICOM Viewer in Nextcloud

Livianet ⭐ 148

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

SegAN: Semantic Segmentation with Adversarial Learning

Applied Dl 2018 ⭐ 146

Tel-Aviv Deep Learning Boot-camp: 12 Applied Deep Learning Labs

Dicom Server ⭐ 146

OSS Implementation of DICOMweb standard

Deep Histopath ⭐ 143

A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge

Official public repository of Gate

Covidprognosis ⭐ 133

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

Ganspapercollection ⭐ 131

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Rl Medical ⭐ 129

Deep Reinforcement Learning (DRL) agents applied to medical images

Nndetection ⭐ 128

nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.

Mne Cpp ⭐ 113

MNE-CPP: A Framework for Electrophysiology

Monailabel ⭐ 112

MONAI Label is an intelligent open source image labeling and learning tool.

Awesome Medical Imaging ⭐ 108

Awesome list of software that I use to do research in medical imaging.

Grand Challenge.org ⭐ 101

A platform for end-to-end development of machine learning solutions in biomedical imaging

Starviewer ⭐ 95

Starviewer, a cross-platform open source medical imaging software

ADN: Artifact Disentanglement Network for Unsupervised Metal Artifact Reduction

Nobrainer ⭐ 87

A framework for developing neural network models for 3D image processing.

Vnet Tensorflow ⭐ 86

Tensorflow implementation of the V-Net architecture for medical imaging segmentation.

X Ray Classification ⭐ 83

X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2

Kaggle Rsna ⭐ 82

Deep Learning for Automatic Pneumonia Detection, RSNA challenge

Cnn Interpretability ⭐ 78

🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease

Medical Image Segmentation Toolkit based on PaddlePaddle - 基于paddle的医学影像分割框架

Quicknat_pytorch ⭐ 76

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

Pneumonia Detection From Chest X Ray Images With Deep Learning ⭐ 74

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

Odil is a C++11 library for the DICOM standard

Deepbrain ⭐ 63

Deep Learning tools for brain medical images

Data Science Bowl 2018 ⭐ 56

End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle

Lightning Covid19 ⭐ 54

Classification for covid-19 chest X-ray images using Lightning

Compay Syntax ⭐ 49

🔬 Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.

Covid19.miscnn ⭐ 48

Robust Chest CT Image Segmentation of COVID-19 Lung Infection based on limited data

Itksphinxexamples ⭐ 44

Cookbook examples for the Insight Toolkit documented with Sphinx

Rivuletpy ⭐ 38

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Extensionsindex ⭐ 37

Slicer extensions index

Segment Open ⭐ 37

Segment Source Distribution

Vqa Med 2019 ⭐ 35

Visual Question Answering in the Medical Domain VQA-Med 2019

Projectweek ⭐ 31

Website for NA-MIC Project Weeks

Domainadaptation ⭐ 31

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

Mousemorph ⭐ 20

Tools for MRI mouse brain morphometry

Brain Tumor Segmentation Keras ⭐ 20

Keras implementation of the multi-channel cascaded architecture introduced in the paper "Brain Tumor Segmentation with Deep Neural Networks"

1-100 of 102 projects

Advertising 📦 10

Application Programming Interfaces 📦 124

Applications 📦 192

Artificial Intelligence 📦 78

Blockchain 📦 73

Build Tools 📦 113

Cloud Computing 📦 80

Code Quality 📦 28

Collaboration 📦 32

Command Line Interface 📦 49

Community 📦 83

Companies 📦 60

Compilers 📦 63

Computer Science 📦 80

Configuration Management 📦 42

Content Management 📦 175

Control Flow 📦 213

Data Formats 📦 78

Data Processing 📦 276

Data Storage 📦 135

Economics 📦 64

Frameworks 📦 215

Graphics 📦 110

Hardware 📦 152

Integrated Development Environments 📦 49

Learning Resources 📦 166

Libraries 📦 129

Lists Of Projects 📦 22

Machine Learning 📦 347

Mapping 📦 64

Marketing 📦 15

Mathematics 📦 55

Messaging 📦 98

Networking 📦 315

Operating Systems 📦 89

Operations 📦 121

Package Managers 📦 55

Programming Languages 📦 245

Runtime Environments 📦 100

Science 📦 42

Security 📦 396

Social Media 📦 27

Software Architecture 📦 72

Software Development 📦 72

Software Performance 📦 58

Software Quality 📦 133

Text Editors 📦 49

Text Processing 📦 136

User Interface 📦 330

User Interface Components 📦 514

Version Control 📦 30

Virtualization 📦 71

Web Browsers 📦 42

Web Servers 📦 26

Web User Interface 📦 210