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The Top 801 Medical Imaging Open Source Projects

Categories > Science > Medical Imaging
Deep Learning Drizzle ⭐ 10,044
Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!
most recent commit 8 months ago
Viewers ⭐ 2,147
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
dependent packages 14total releases 38most recent commit 2 days agonpm @ohif/i18n} Downloads
Awesome Gan For Medical Imaging ⭐ 1,919
Awesome GAN for Medical Imaging
most recent commit 6 months ago
Cornerstone ⭐ 1,861
JavaScript library to display interactive medical images including but not limited to DICOM
dependent packages 72total releases 35most recent commit 3 days agonpm cornerstone-core} Downloads
Unetplusplus ⭐ 1,614
Official Keras Implementation for UNet++ in IEEE Transactions on Medical Imaging and DLMIA 2018
most recent commit 10 months ago
Dwv ⭐ 1,401
DICOM Web Viewer: open source zero footprint medical image library.
dependent packages 8total releases 45most recent commit 2 days agonpm dwv} Downloads
Medical Imaging Datasets ⭐ 1,300
A list of Medical imaging datasets.
most recent commit a year ago
Dltk ⭐ 1,293
Deep Learning Toolkit for Medical Image Analysis
most recent commit 10 months ago
Deep Learning For Medical Applications ⭐ 1,174
Deep Learning Papers on Medical Image Analysis
most recent commit 4 years ago
Niftynet ⭐ 1,170
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
most recent commit 3 years ago
Medicaldetectiontoolkit ⭐ 1,167
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
most recent commit 12 days ago
Itk ⭐ 1,115
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
dependent packages 2total releases 4most recent commit 3 days ago
Deepmedic ⭐ 928
Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans
most recent commit 2 years ago
Medicalzoopytorch ⭐ 896
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
most recent commit 10 months ago
Fastmri ⭐ 891
A large-scale dataset of both raw MRI measurements and clinical MRI images.
total releases 4most recent commit 21 days ago
Slicergitsvnarchive ⭐ 883
Multi-platform, free open source software for visualization and image computing.
most recent commit 3 years ago
Fo Dicom ⭐ 866
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
dependent packages 20total releases 79most recent commit 11 days agonuget fo-dicom} Downloads
Slicer ⭐ 858
Multi-platform, free open source software for visualization and image computing.
most recent commit 2 days ago
Dataset ⭐ 856
医学影像数据集列表 『An Index for Medical Imaging Datasets』
most recent commit 3 months ago
Pyradiomics ⭐ 795
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
dependent packages 13total releases 8most recent commit 2 months agopypi pyradiomics} Downloads
Dicom ⭐ 765
⚡High Performance DICOM Medical Image Parser in Go.
dependent packages 4total releases 33most recent commit 3 months ago
Breast_cancer_classifier ⭐ 743
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
most recent commit 13 days ago
Learning Deep Learning ⭐ 734
Paper reading notes on Deep Learning and Machine Learning
most recent commit 14 days ago
Medicaltorch ⭐ 724
A medical imaging framework for Pytorch
total releases 2most recent commit 2 years ago
Medmnist ⭐ 658
18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification: try "pip install medmnist"!
total releases 3most recent commit a month ago
Ctk ⭐ 625
A set of common support code for medical imaging, surgical navigation, and related purposes.
most recent commit 4 days ago
All About The Gan ⭐ 602
All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN
most recent commit 4 years ago
Kaggle_ndsb2017 ⭐ 568
Kaggle datascience bowl 2017
most recent commit 5 years ago
Dipy ⭐ 558
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
most recent commit 3 days ago
Torchxrayvision ⭐ 550
TorchXRayVision: A library of chest X-ray datasets and models.
total releases 33most recent commit 16 days ago
Awesome Transformers In Medical Imaging ⭐ 532
A collection of resources on applications of Transformers in Medical Imaging.
most recent commit 4 months ago
Cornerstonetools ⭐ 529
A framework for tools built on top of Cornerstone.
dependent packages 36total releases 409most recent commit 3 days agonpm cornerstone-tools} Downloads
Medical Datasets ⭐ 528
tracking medical datasets, with a focus on medical imaging
most recent commit 2 months ago
Mitk ⭐ 526
The Medical Imaging Interaction Toolkit.
most recent commit 2 days ago
Weasis ⭐ 489
Weasis is a DICOM viewer available as a desktop application or as a web-based application.
most recent commit 14 days ago
Medical Transformer ⭐ 484
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
most recent commit 8 months ago
Robot Surgery Segmentation ⭐ 475
Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
most recent commit 4 years ago
Innereye Deeplearning ⭐ 466
Medical Imaging Deep Learning library to train and deploy 3D segmentation models on Azure Machine Learning
most recent commit 12 days ago
Lungmask ⭐ 439
Automated lung segmentation in CT
most recent commit 2 months ago
Clearcanvas ⭐ 365
Open source code base for enabling software innovation in medical imaging
most recent commit a year ago
Nndetection ⭐ 355
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
most recent commit 6 days ago
U Net Brain Tumor ⭐ 351
U-Net Brain Tumor Segmentation
most recent commit 3 years ago
Miscnn ⭐ 338
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
total releases 60most recent commit 13 days ago
Monailabel ⭐ 337
MONAI Label is an intelligent open source image labeling and learning tool.
total releases 70most recent commit a day ago
Dicoogle ⭐ 332
Dicoogle - Open Source PACS
most recent commit 11 days ago
Fast ⭐ 313
A framework for high-performance medical image processing, neural network inference and visualization
total releases 11most recent commit 3 days ago
Dicom Server ⭐ 300
OSS Implementation of DICOMweb standard
most recent commit 3 days ago
Multiresunet ⭐ 298
MultiResUNet : Rethinking the U-Net architecture for multimodal biomedical image segmentation
most recent commit a month ago
Xvision ⭐ 294
Chest Xray image analysis using Deep learning !
most recent commit 3 years ago
Pyimsegm ⭐ 289
Image segmentation - general superpixel segmentation & center detection & region growing
most recent commit a year ago
Gdcm ⭐ 289
Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
most recent commit 19 days ago
Cascaded Fcn ⭐ 283
Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"
most recent commit 5 years ago
Dicom Rs ⭐ 266
Pure Rust implementation of the DICOM standard
dependent packages 11total releases 9most recent commit 10 days agocargo dicom-core} Downloads
Neurite ⭐ 265
Neural networks toolbox focused on medical image analysis
dependent packages 1total releases 2most recent commit 12 days agopypi neurite} Downloads
Handmovementtracking ⭐ 247
A simple hand movement tracking module for humans ✍️
most recent commit 6 months ago
Kiu Net Pytorch ⭐ 245
Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
most recent commit 7 months ago
Dcmjs ⭐ 222
Javascript implementation of DICOM manipulation
dependent packages 17total releases 196most recent commit 2 days agonpm dcmjs} Downloads
Delira ⭐ 219
Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow
total releases 10most recent commit 2 years ago
Cucim ⭐ 198
dependent packages 8total releases 23most recent commit 5 days agopypi cucim} Downloads
Radio ⭐ 186
RadIO is a library for data science research of computed tomography imaging
most recent commit 4 years ago
Dicomviewer ⭐ 184
DICOM Viewer in Nextcloud
most recent commit 19 hours ago
Chexnet With Localization ⭐ 181
Weakly Supervised Learning for Findings Detection in Medical Images
most recent commit 3 years ago
Visvis ⭐ 180
Visvis - the object oriented approach to visualization
dependent packages 3total releases 18most recent commit 2 years agopypi visvis} Downloads
Gate ⭐ 175
Official public repository of Gate
most recent commit 18 days ago
Staintools ⭐ 166
Tools for tissue image stain normalisation and augmentation in Python 3
dependent packages 1total releases 26most recent commit 2 years agopypi staintools} Downloads
Bccd_dataset ⭐ 160
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
most recent commit 3 years ago
Open Solution Data Science Bowl 2018 ⭐ 159
Open solution to the Data Science Bowl 2018
most recent commit 5 months ago
Rl Medical ⭐ 154
Deep Reinforcement Learning (DRL) agents applied to medical images
most recent commit 2 years ago
Covidprognosis ⭐ 151
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
most recent commit 3 months ago
Mirtk ⭐ 148
The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at
most recent commit 4 months ago
Direct ⭐ 147
Deep learning framework for MRI reconstruction
most recent commit 23 days ago
Alizams ⭐ 144
DICOM Viewer
most recent commit 3 days ago
Cornerstone3d Beta ⭐ 135
Cornerstone is a set of JavaScript libraries that can be used to build web-based medical imaging applications. It provides a framework to build radiology applications such as the OHIF Viewer.
most recent commit 2 days ago
Livianet ⭐ 133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
most recent commit 3 years ago
Grand Challenge.org ⭐ 132
A platform for end-to-end development of machine learning solutions in biomedical imaging
most recent commit 6 days ago
Mne Cpp ⭐ 132
MNE-CPP: A Framework for Electrophysiology
most recent commit 3 days ago
Captk ⭐ 131
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
most recent commit 6 months ago
Segan ⭐ 127
SegAN: Semantic Segmentation with Adversarial Learning
most recent commit 5 years ago
Unext Pytorch ⭐ 124
Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022
most recent commit 6 months ago
Iciar2018 ⭐ 124
Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)
most recent commit 3 years ago
Ganspapercollection ⭐ 120
most recent commit 3 years ago
Nobrainer ⭐ 118
A framework for developing neural network models for 3D image processing.
total releases 11most recent commit 6 days ago
Clinicadl ⭐ 117
Framework for the reproducible processing of neuroimaging data with deep learning methods
total releases 24most recent commit a month ago
Cuda_spatial_deform ⭐ 110
A fast tool to do image augmentation on GPU(especially elastic_deform), can be helpful to research on Medical Image.
most recent commit 9 months ago
Awesome Diffusion Models In Medical Imaging ⭐ 109
Diffusion Models in Medical Imaging
most recent commit 6 days ago
Gmic ⭐ 106
An interpretable classifier for high-resolution breast cancer screening images utilizing weakly supervised localization
most recent commit 3 months ago
Neurdicom ⭐ 97
RESTful PACS server with plugins
most recent commit 9 months ago
Starviewer ⭐ 95
Starviewer, a cross-platform open source medical imaging software
most recent commit a year ago
Optic Nerve Cnn ⭐ 92
Code repository for a paper "Optic Disc and Cup Segmentation Methods for Glaucoma Detection with Modification of U-Net Convolutional Neural Network"
most recent commit 9 months ago
Deep Histopath ⭐ 92
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
most recent commit 4 years ago
Kaapana ⭐ 91
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
most recent commit 4 days ago
Models ⭐ 91
DLTK Model Zoo
most recent commit 4 years ago
Istn ⭐ 86
Image-and-Spatial Transformer Networks
most recent commit 9 months ago
X Ray Classification ⭐ 85
X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2
most recent commit 5 years ago
Resunetplusplus With Crf And Tta ⭐ 82
ResUNet++, CRF, and TTA for segmentation of medical images (IEEE JBIHI)
most recent commit a month ago
Medtagger ⭐ 82
A collaborative framework for annotating medical datasets using crowdsourcing.
most recent commit 9 months ago
Rt Utils ⭐ 81
A minimal Python library to facilitate the creation and manipulation of DICOM RTStructs.
dependent packages 3total releases 26most recent commit 2 months agopypi rt-utils} Downloads
Vnet3d ⭐ 81
Prostate MR Image Segmentation 2012
most recent commit 2 years ago
Unet Segmentation In Keras Tensorflow ⭐ 81
UNet is a fully convolutional network(FCN) that does image segmentation. Its goal is to predict each pixel's class. It is built upon the FCN and modified in a way that it yields better segmentation in medical imaging.
most recent commit 2 years ago
Awesome Self Supervised Learning In Medical Imaging ⭐ 80
This repository is mainly dedicated for listing the recent research advancements in the application of Self-Supervised-Learning in medical images computing field
most recent commit 11 days ago
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