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The Top 89 Medical Imaging Open Source Projects
Categories
>
Science
>
Medical Imaging
Deep Learning Drizzle
⭐
9,118
Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!
Awesome Gan For Medical Imaging
⭐
1,580
Awesome GAN for Medical Imaging
Cornerstone
⭐
1,493
JavaScript library to display interactive medical images including but not limited to DICOM
Viewers
⭐
1,431
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
Deep Learning For Medical Applications
⭐
1,288
Deep Learning Papers on Medical Image Analysis
Niftynet
⭐
1,268
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
Dltk
⭐
1,239
Deep Learning Toolkit for Medical Image Analysis
Dwv
⭐
1,136
DICOM Web Viewer: open source zero footprint medical image viewer.
Medical Imaging Datasets
⭐
1,054
A list of Medical imaging datasets.
Medicaldetectiontoolkit
⭐
905
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
Slicergitsvnarchive
⭐
895
Multi-platform, free open source software for visualization and image computing.
Deepmedic
⭐
799
Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans
Itk
⭐
794
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Medicaltorch
⭐
709
A medical imaging framework for Pytorch
Torchio
⭐
694
Medical image preprocessing and augmentation toolkit for deep learning
Fo Dicom
⭐
668
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
Dicom
⭐
639
⚡High Performance DICOM Medical Image Parser in Go.
All About The Gan
⭐
628
All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN
Breast_cancer_classifier
⭐
610
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
Kaggle_ndsb2017
⭐
598
Kaggle datascience bowl 2017
Pyradiomics
⭐
543
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
Medicalzoopytorch
⭐
531
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
Robot Surgery Segmentation
⭐
527
Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
Ctk
⭐
491
A set of common support code for medical imaging, surgical navigation, and related purposes.
Cornerstonetools
⭐
411
A framework for tools built on top of Cornerstone.
U Net Brain Tumor
⭐
395
U-Net Brain Tumor Segmentation
Dipy
⭐
391
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Learning Deep Learning
⭐
375
Paper reading notes on Deep Learning and Machine Learning
U Net
⭐
371
U-Net: Convolutional Networks for Biomedical Image Segmentation
Mitk
⭐
355
The Medical Imaging Interaction Toolkit.
Weasis
⭐
304
Weasis is a DICOM viewer available as a desktop application or as a web-based application.
Xvision
⭐
303
Chest Xray image analysis using Deep learning !
Cascaded Fcn
⭐
294
Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"
Medical Datasets
⭐
284
tracking medical datasets, with a focus on medical imaging
Lungmask
⭐
274
Automated lung segmentation in CT
Slicer
⭐
248
Multi-platform, free open source software for visualization and image computing.
Gdcm
⭐
237
Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
Innereye Deeplearning
⭐
236
Medical Imaging Deep Learning library to train and deploy models on Azure Machine Learning and Azure Stack
Dicoogle
⭐
234
Dicoogle - Open Source PACS
Chexnet With Localization
⭐
233
Weakly Supervised Learning for Findings Detection in Medical Images
Delira
⭐
220
Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow
Bccd_dataset
⭐
215
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
Pyimsegm
⭐
208
Image segmentation - general superpixel segmentation & center detection & region growing
Neurite
⭐
198
Neural networks toolbox focused on medical image analysis
Radio
⭐
196
RadIO is a library for data science research of computed tomography imaging
Miscnn
⭐
188
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
Fast
⭐
179
A framework for GPU based high-performance medical image processing and visualization
Visvis
⭐
176
Visvis - the object oriented approach to visualization
Staintools
⭐
163
Tools for tissue image stain normalisation and augmentation in Python 3
Open Solution Data Science Bowl 2018
⭐
156
Open solution to the Data Science Bowl 2018
Dicom Rs
⭐
147
Pure Rust implementation of the DICOM standard
Iciar2018
⭐
146
Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)
Applied Dl 2018
⭐
146
Tel-Aviv Deep Learning Boot-camp: 12 Applied Deep Learning Labs
Dcmjs
⭐
144
Javascript implementation of DICOM manipulation
Livianet
⭐
143
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Segan
⭐
143
SegAN: Semantic Segmentation with Adversarial Learning
Dicomviewer
⭐
138
DICOM Viewer in Nextcloud
Deep Histopath
⭐
131
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
Ganspapercollection
⭐
130
Gate
⭐
126
Official public repository of Gate
Kiu Net Pytorch
⭐
122
Official Pytorch Code of KiU-Net for Image Segmentation - MICCAI 2020 (Oral)
Rl Medical
⭐
121
Deep Reinforcement Learning (DRL) agents applied to medical images
Mirtk
⭐
119
The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at
Covidprognosis
⭐
112
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
Mne Cpp
⭐
102
MNE-CPP: A Framework for Electrophysiology
Models
⭐
101
DLTK Model Zoo
Grand Challenge.org
⭐
85
A platform for end-to-end development of machine learning solutions in biomedical imaging
Vnet Tensorflow
⭐
84
Tensorflow implementation of the V-Net architecture for medical imaging segmentation.
Starviewer
⭐
83
Starviewer, a cross-platform open source medical imaging software
X Ray Classification
⭐
83
X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2
Awesome Medical Imaging
⭐
82
Awesome list of software that I use to do research in medical imaging.
Quicknat_pytorch
⭐
72
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
Kaggle Rsna
⭐
72
Deep Learning for Automatic Pneumonia Detection, RSNA challenge
Odil
⭐
68
Odil is a C++11 library for the DICOM standard
Cnn Interpretability
⭐
66
🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease
Pneumonia Detection From Chest X Ray Images With Deep Learning
⭐
64
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
Data Science Bowl 2018
⭐
56
End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle
Lightning Covid19
⭐
49
Classification for covid-19 chest X-ray images using Lightning
Deepbrain
⭐
47
Deep Learning tools for brain medical images
Itkexamples
⭐
38
Cookbook examples for the Insight Toolkit documented with Sphinx
Extensionsindex
⭐
36
Slicer extensions index
Segment Open
⭐
34
Segment Source Distribution
Rivuletpy
⭐
31
Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.
Projectweek
⭐
31
Website for NA-MIC Project Weeks
Domainadaptation
⭐
27
Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".
Brain Tumor Segmentation Keras
⭐
20
Keras implementation of the multi-channel cascaded architecture introduced in the paper "Brain Tumor Segmentation with Deep Neural Networks"
Mousemorph
⭐
19
Tools for MRI mouse brain morphometry
Ganseg
⭐
18
Framework for medical image segmentation using deep neural networks
Im2p
⭐
15
Tensorflow implementation of paper: A Hierarchical Approach for Generating Descriptive Image Paragraphs
1-89 of 89 projects
Advertising
📦 10
All Projects
Application Programming Interfaces
📦 124
Applications
📦 192
Artificial Intelligence
📦 78
Blockchain
📦 73
Build Tools
📦 113
Cloud Computing
📦 80
Code Quality
📦 28
Collaboration
📦 32
Command Line Interface
📦 49
Community
📦 83
Companies
📦 60
Compilers
📦 63
Computer Science
📦 80
Configuration Management
📦 42
Content Management
📦 175
Control Flow
📦 213
Data Formats
📦 78
Data Processing
📦 276
Data Storage
📦 135
Economics
📦 64
Frameworks
📦 215
Games
📦 129
Graphics
📦 110
Hardware
📦 152
Integrated Development Environments
📦 49
Learning Resources
📦 166
Legal
📦 29
Libraries
📦 129
Lists Of Projects
📦 22
Machine Learning
📦 347
Mapping
📦 64
Marketing
📦 15
Mathematics
📦 55
Media
📦 239
Messaging
📦 98
Networking
📦 315
Operating Systems
📦 89
Operations
📦 121
Package Managers
📦 55
Programming Languages
📦 245
Runtime Environments
📦 100
Science
📦 42
Security
📦 396
Social Media
📦 27
Software Architecture
📦 72
Software Development
📦 72
Software Performance
📦 58
Software Quality
📦 133
Text Editors
📦 49
Text Processing
📦 136
User Interface
📦 330
User Interface Components
📦 514
Version Control
📦 30
Virtualization
📦 71
Web Browsers
📦 42
Web Servers
📦 26
Web User Interface
📦 210