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The Top 623 Medical Imaging Open Source Projects on Github

Categories > Science > Medical Imaging
Deep Learning Drizzle ⭐ 9,658
Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!
Viewers ⭐ 1,789
OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages
Cornerstone ⭐ 1,692
JavaScript library to display interactive medical images including but not limited to DICOM
Awesome Gan For Medical Imaging ⭐ 1,687
Awesome GAN for Medical Imaging
Medical Imaging Datasets ⭐ 1,300
A list of Medical imaging datasets.
Dwv ⭐ 1,275
DICOM Web Viewer: open source zero footprint medical image library.
Deep Learning For Medical Applications ⭐ 1,174
Deep Learning Papers on Medical Image Analysis
Niftynet ⭐ 1,170
[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
Dltk ⭐ 1,129
Deep Learning Toolkit for Medical Image Analysis
Medicaldetectiontoolkit ⭐ 1,034
The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.
Itk ⭐ 957
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Deepmedic ⭐ 889
Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans
Slicergitsvnarchive ⭐ 883
Multi-platform, free open source software for visualization and image computing.
Fo Dicom ⭐ 768
Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity
Fastmri ⭐ 755
A large-scale dataset of both raw MRI measurements and clinical MRI images.
Medicaltorch ⭐ 724
A medical imaging framework for Pytorch
Medicalzoopytorch ⭐ 712
A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation
Pyradiomics ⭐ 698
Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
Dicom ⭐ 690
⚡High Performance DICOM Medical Image Parser in Go.
Breast_cancer_classifier ⭐ 657
Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening
All About The Gan ⭐ 602
All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN
Slicer ⭐ 576
Multi-platform, free open source software for visualization and image computing.
Kaggle_ndsb2017 ⭐ 568
Kaggle datascience bowl 2017
Learning Deep Learning ⭐ 560
Paper reading notes on Deep Learning and Machine Learning
Ctk ⭐ 554
A set of common support code for medical imaging, surgical navigation, and related purposes.
Medmnist ⭐ 530
pip install medmnist: 18 MNIST-like Datasets for 2D and 3D Biomedical Image Classification
Dataset ⭐ 524
医学影像数据集列表
Cornerstonetools ⭐ 485
A framework for tools built on top of Cornerstone.
Dipy ⭐ 483
DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.
Robot Surgery Segmentation ⭐ 475
Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge
Mitk ⭐ 447
The Medical Imaging Interaction Toolkit.
Medical Datasets ⭐ 442
tracking medical datasets, with a focus on medical imaging
Medical Transformer ⭐ 397
Official Pytorch Code for "Medical Transformer: Gated Axial-Attention for Medical Image Segmentation" - MICCAI 2021
Innereye Deeplearning ⭐ 391
Medical Imaging Deep Learning library to train and deploy models on Azure Machine Learning
Weasis ⭐ 377
Weasis is a DICOM viewer available as a desktop application or as a web-based application.
U Net ⭐ 355
U-Net: Convolutional Networks for Biomedical Image Segmentation
U Net Brain Tumor ⭐ 351
U-Net Brain Tumor Segmentation
Lungmask ⭐ 348
Automated lung segmentation in CT
Xvision ⭐ 294
Chest Xray image analysis using Deep learning !
Pyimsegm ⭐ 289
Image segmentation - general superpixel segmentation & center detection & region growing
Dicoogle ⭐ 285
Dicoogle - Open Source PACS
Cascaded Fcn ⭐ 283
Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"
Miscnn ⭐ 279
A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning
Gdcm ⭐ 269
Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm
Fast ⭐ 241
A framework for GPU based high-performance medical image processing and visualization
Neurite ⭐ 240
Neural networks toolbox focused on medical image analysis
Delira ⭐ 220
Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow
Dicom Rs ⭐ 209
Pure Rust implementation of the DICOM standard
Kiu Net Pytorch ⭐ 207
Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI
Monailabel ⭐ 196
MONAI Label is an intelligent open source image labeling and learning tool.
Nndetection ⭐ 193
nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that were used to develop and evaluate the performance of the proposed method.
Dicom Server ⭐ 192
OSS Implementation of DICOMweb standard
Dcmjs ⭐ 190
Javascript implementation of DICOM manipulation
Radio ⭐ 186
RadIO is a library for data science research of computed tomography imaging
Chexnet With Localization ⭐ 181
Weakly Supervised Learning for Findings Detection in Medical Images
Visvis ⭐ 180
Visvis - the object oriented approach to visualization
Staintools ⭐ 166
Tools for tissue image stain normalisation and augmentation in Python 3
Dicomviewer ⭐ 161
DICOM Viewer in Nextcloud
Bccd_dataset ⭐ 160
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
Open Solution Data Science Bowl 2018 ⭐ 160
Open solution to the Data Science Bowl 2018
Gate ⭐ 152
Official public repository of Gate
Covidprognosis ⭐ 145
COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations
Livianet ⭐ 133
This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"
Mirtk ⭐ 130
The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at
Segan ⭐ 127
SegAN: Semantic Segmentation with Adversarial Learning
Iciar2018 ⭐ 124
Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)
Captk ⭐ 123
Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk
Mne Cpp ⭐ 122
MNE-CPP: A Framework for Electrophysiology
Ganspapercollection ⭐ 120
Grand Challenge.org ⭐ 111
A platform for end-to-end development of machine learning solutions in biomedical imaging
Cucim ⭐ 103
Nobrainer ⭐ 103
A framework for developing neural network models for 3D image processing.
Clinicadl ⭐ 101
Framework for the reproducible processing of neuroimaging data with deep learning methods
Rl Medical ⭐ 99
Deep Reinforcement Learning (DRL) agents applied to medical images
Starviewer ⭐ 95
Starviewer, a cross-platform open source medical imaging software
Deep Histopath ⭐ 92
A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge
Models ⭐ 91
DLTK Model Zoo
X Ray Classification ⭐ 85
X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2
Cuda_spatial_deform ⭐ 84
A fast tool to do image augmentation on GPU(especially elastic_deform), can be helpful to research on Medical Image.
Vnet3d ⭐ 81
Prostate MR Image Segmentation 2012
Fair.m ⭐ 79
Flexible Algorithms for Image Registration
Alizams ⭐ 78
DICOM Viewer
Medseg ⭐ 77
Medical Image Segmentation Toolkit based on PaddlePaddle - 基于paddle的医学影像分割框架
Gmic ⭐ 77
An interpretable classifier for high-resolution breast cancer screening images utilizing weakly supervised localization
Quicknat_pytorch ⭐ 75
PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty
Pneumonia Detection From Chest X Ray Images With Deep Learning ⭐ 74
Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models
Optic Nerve Cnn ⭐ 73
Code repository for a paper "Optic Disc and Cup Segmentation Methods for Glaucoma Detection with Modification of U-Net Convolutional Neural Network"
Odil ⭐ 72
Odil is a C++11 library for the DICOM standard
Istn ⭐ 69
Image-and-Spatial Transformer Networks
Libauc ⭐ 69
An End-to-End Machine Learning Library to Optimize AUC (AUROC, AUPRC).
Kaapana ⭐ 67
Kaapana (from the hawaiian word kaʻāpana, meaning “distributor” or “part”) is an open source toolkit for state of the art platform provisioning in the field of medical data analysis. The applications comprise AI-based workflows and federated learning scenarios with a focus on radiological and radiotherapeutic imaging.
Vnet Tensorflow ⭐ 66
Tensorflow implementation of the V-Net architecture for medical imaging segmentation.
Nifti Image Converter ⭐ 64
🖼 A lightweight neuroimaging .nii to .png converter for Matlab and Python users
Birl ⭐ 63
BIRL: Benchmark on Image Registration methods with Landmark validations
Angiodysplasia Segmentation ⭐ 61
Wining solution and its further development for MICCAI 2017 Endoscopic Vision Challenge Angiodysplasia Detection and Localization
Kaggle Rsna ⭐ 61
Deep Learning for Automatic Pneumonia Detection, RSNA challenge
Dicom ⭐ 60
High Performance DICOM Medical Image Parser in Go.
Dwv Vue ⭐ 60
Medical image viewer using DWV (DICOM Web Viewer) and Vue.js.
Unet ⭐ 60
"pip install unet": PyTorch Implementation of 1D, 2D and 3D U-Net architecture.
React Cornerstone Viewport ⭐ 59
Cornerstone medical image viewport component for React
1-100 of 623 projects

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Advertising 📦 9
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Applications 📦 181
Artificial Intelligence 📦 72
Blockchain 📦 70
Build Tools 📦 111
Cloud Computing 📦 79
Code Quality 📦 28
Collaboration 📦 30
Command Line Interface 📦 48
Community 📦 81
Companies 📦 60
Compilers 📦 60
Computer Science 📦 74
Configuration Management 📦 39
Content Management 📦 167
Control Flow 📦 197
Data Formats 📦 77
Data Processing 📦 266
Data Storage 📦 132
Economics 📦 60
Frameworks 📦 198
Games 📦 122
Graphics 📦 103
Hardware 📦 148
Integrated Development Environments 📦 47
Learning Resources 📦 147
Legal 📦 28
Libraries 📦 119
Lists Of Projects 📦 21
Machine Learning 📦 336
Mapping 📦 61
Marketing 📦 15
Mathematics 📦 55
Media 📦 228
Messaging 📦 97
Networking 📦 304
Operating Systems 📦 84
Operations 📦 120
Package Managers 📦 52
Programming Languages 📦 229
Runtime Environments 📦 96
Science 📦 42
Security 📦 375
Social Media 📦 26
Software Architecture 📦 70
Software Development 📦 68
Software Performance 📦 57
Software Quality 📦 127
Text Editors 📦 45
Text Processing 📦 131
User Interface 📦 310
User Interface Components 📦 465
Version Control 📦 29
Virtualization 📦 68
Web Browsers 📦 38
Web Servers 📦 25
Web User Interface 📦 194
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