The Top 89 Medical Imaging Open Source Projects

Awesome Open Source

Awesome Open Source

Combined Topics

medical-imaging x

Advertising 📦 10

Application Programming Interfaces 📦 124

Applications 📦 192

Artificial Intelligence 📦 78

Blockchain 📦 73

Build Tools 📦 113

Cloud Computing 📦 80

Code Quality 📦 28

Collaboration 📦 32

Command Line Interface 📦 49

Community 📦 83

Companies 📦 60

Compilers 📦 63

Computer Science 📦 80

Configuration Management 📦 42

Content Management 📦 175

Control Flow 📦 213

Data Formats 📦 78

Data Processing 📦 276

Data Storage 📦 135

Economics 📦 64

Frameworks 📦 215

Graphics 📦 110

Hardware 📦 152

Integrated Development Environments 📦 49

Learning Resources 📦 166

Libraries 📦 129

Lists Of Projects 📦 22

Machine Learning 📦 347

Mapping 📦 64

Marketing 📦 15

Mathematics 📦 55

Messaging 📦 98

Networking 📦 315

Operating Systems 📦 89

Operations 📦 121

Package Managers 📦 55

Programming Languages 📦 245

Runtime Environments 📦 100

Science 📦 42

Security 📦 396

Social Media 📦 27

Software Architecture 📦 72

Software Development 📦 72

Software Performance 📦 58

Software Quality 📦 133

Text Editors 📦 49

Text Processing 📦 136

User Interface 📦 330

User Interface Components 📦 514

Version Control 📦 30

Virtualization 📦 71

Web Browsers 📦 42

Web Servers 📦 26

Web User Interface 📦 210

The Top 89 Medical Imaging Open Source Projects

Categories > Science > Medical Imaging

Deep Learning Drizzle ⭐ 9,118

Drench yourself in Deep Learning, Reinforcement Learning, Machine Learning, Computer Vision, and NLP by learning from these exciting lectures!!

Awesome Gan For Medical Imaging ⭐ 1,580

Awesome GAN for Medical Imaging

Cornerstone ⭐ 1,493

JavaScript library to display interactive medical images including but not limited to DICOM

Viewers ⭐ 1,431

OHIF zero-footprint DICOM viewer and oncology specific Lesion Tracker, plus shared extension packages

Deep Learning For Medical Applications ⭐ 1,288

Deep Learning Papers on Medical Image Analysis

Niftynet ⭐ 1,268

[unmaintained] An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy

Deep Learning Toolkit for Medical Image Analysis

DICOM Web Viewer: open source zero footprint medical image viewer.

Medical Imaging Datasets ⭐ 1,054

A list of Medical imaging datasets.

Medicaldetectiontoolkit ⭐ 905

The Medical Detection Toolkit contains 2D + 3D implementations of prevalent object detectors such as Mask R-CNN, Retina Net, Retina U-Net, as well as a training and inference framework focused on dealing with medical images.

Slicergitsvnarchive ⭐ 895

Multi-platform, free open source software for visualization and image computing.

Deepmedic ⭐ 799

Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans

Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.

Medicaltorch ⭐ 709

A medical imaging framework for Pytorch

Torchio ⭐ 694

Medical image preprocessing and augmentation toolkit for deep learning

Fo Dicom ⭐ 668

Fellow Oak DICOM for .NET, .NET Core, Universal Windows, Android, iOS, Mono and Unity

⚡High Performance DICOM Medical Image Parser in Go.

All About The Gan ⭐ 628

All About the GANs(Generative Adversarial Networks) - Summarized lists for GAN

Breast_cancer_classifier ⭐ 610

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

Kaggle_ndsb2017 ⭐ 598

Kaggle datascience bowl 2017

Pyradiomics ⭐ 543

Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics

Medicalzoopytorch ⭐ 531

A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

Robot Surgery Segmentation ⭐ 527

Wining solution and its improvement for MICCAI 2017 Robotic Instrument Segmentation Sub-Challenge

A set of common support code for medical imaging, surgical navigation, and related purposes.

Cornerstonetools ⭐ 411

A framework for tools built on top of Cornerstone.

U Net Brain Tumor ⭐ 395

U-Net Brain Tumor Segmentation

DIPY is the paragon 3D/4D+ imaging library in Python. Contains generic methods for spatial normalization, signal processing, machine learning, statistical analysis and visualization of medical images. Additionally, it contains specialized methods for computational anatomy including diffusion, perfusion and structural imaging.

Learning Deep Learning ⭐ 375

Paper reading notes on Deep Learning and Machine Learning

U-Net: Convolutional Networks for Biomedical Image Segmentation

The Medical Imaging Interaction Toolkit.

Weasis is a DICOM viewer available as a desktop application or as a web-based application.

Xvision ⭐ 303

Chest Xray image analysis using Deep learning !

Cascaded Fcn ⭐ 294

Source code for the MICCAI 2016 Paper "Automatic Liver and Lesion Segmentation in CT Using Cascaded Fully Convolutional NeuralNetworks and 3D Conditional Random Fields"

Medical Datasets ⭐ 284

tracking medical datasets, with a focus on medical imaging

Lungmask ⭐ 274

Automated lung segmentation in CT

Multi-platform, free open source software for visualization and image computing.

Grassroots DICOM read-only mirror. Only for Pull Request. Please report bug at http://sf.net/p/gdcm

Innereye Deeplearning ⭐ 236

Medical Imaging Deep Learning library to train and deploy models on Azure Machine Learning and Azure Stack

Dicoogle ⭐ 234

Dicoogle - Open Source PACS

Chexnet With Localization ⭐ 233

Weakly Supervised Learning for Findings Detection in Medical Images

Lightweight framework for fast prototyping and training deep neural networks with PyTorch and TensorFlow

Bccd_dataset ⭐ 215

BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.

Pyimsegm ⭐ 208

Image segmentation - general superpixel segmentation & center detection & region growing

Neurite ⭐ 198

Neural networks toolbox focused on medical image analysis

RadIO is a library for data science research of computed tomography imaging

A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

A framework for GPU based high-performance medical image processing and visualization

Visvis - the object oriented approach to visualization

Staintools ⭐ 163

Tools for tissue image stain normalisation and augmentation in Python 3

Open Solution Data Science Bowl 2018 ⭐ 156

Open solution to the Data Science Bowl 2018

Dicom Rs ⭐ 147

Pure Rust implementation of the DICOM standard

Iciar2018 ⭐ 146

Two-Stage Convolutional Neural Network for Breast Cancer Histology Image Classification. ICIAR 2018 Grand Challenge on BreAst Cancer Histology images (BACH)

Applied Dl 2018 ⭐ 146

Tel-Aviv Deep Learning Boot-camp: 12 Applied Deep Learning Labs

Javascript implementation of DICOM manipulation

Livianet ⭐ 143

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

SegAN: Semantic Segmentation with Adversarial Learning

Dicomviewer ⭐ 138

DICOM Viewer in Nextcloud

Deep Histopath ⭐ 131

A deep learning approach to predicting breast tumor proliferation scores for the TUPAC16 challenge

Ganspapercollection ⭐ 130

Official public repository of Gate

Kiu Net Pytorch ⭐ 122

Official Pytorch Code of KiU-Net for Image Segmentation - MICCAI 2020 (Oral)

Rl Medical ⭐ 121

Deep Reinforcement Learning (DRL) agents applied to medical images

The Medical Image Registration ToolKit (MIRTK), the successor of the IRTK, contains common CMake build configuration files, core libraries, and basic command-line tools. Extension packages are hosted by the MIRTK GitHub group at

Covidprognosis ⭐ 112

COVID deterioration prediction based on chest X-ray radiographs via MoCo-trained image representations

Mne Cpp ⭐ 102

MNE-CPP: A Framework for Electrophysiology

Grand Challenge.org ⭐ 85

A platform for end-to-end development of machine learning solutions in biomedical imaging

Vnet Tensorflow ⭐ 84

Tensorflow implementation of the V-Net architecture for medical imaging segmentation.

Starviewer ⭐ 83

Starviewer, a cross-platform open source medical imaging software

X Ray Classification ⭐ 83

X-ray Images (Chest images) analysis and anomaly detection using Transfer learning with inception v2

Awesome Medical Imaging ⭐ 82

Awesome list of software that I use to do research in medical imaging.

Quicknat_pytorch ⭐ 72

PyTorch Implementation of QuickNAT and Bayesian QuickNAT, a fast brain MRI segmentation framework with segmentation Quality control using structure-wise uncertainty

Kaggle Rsna ⭐ 72

Deep Learning for Automatic Pneumonia Detection, RSNA challenge

Odil is a C++11 library for the DICOM standard

Cnn Interpretability ⭐ 66

🏥 Visualizing Convolutional Networks for MRI-based Diagnosis of Alzheimer’s Disease

Pneumonia Detection From Chest X Ray Images With Deep Learning ⭐ 64

Detecting Pneumonia in Chest X-ray Images using Convolutional Neural Network and Pretrained Models

Data Science Bowl 2018 ⭐ 56

End-to-end one-class instance segmentation based on U-Net architecture for Data Science Bowl 2018 in Kaggle

Lightning Covid19 ⭐ 49

Classification for covid-19 chest X-ray images using Lightning

Deepbrain ⭐ 47

Deep Learning tools for brain medical images

Itkexamples ⭐ 38

Cookbook examples for the Insight Toolkit documented with Sphinx

Extensionsindex ⭐ 36

Slicer extensions index

Segment Open ⭐ 34

Segment Source Distribution

Rivuletpy ⭐ 31

Robust 3D Neuron Tracing / General 3D tree structure extraction in Python for 3D images powered by the Rivulet2 algorithm. Pain-free Install & use in 5 mins.

Projectweek ⭐ 31

Website for NA-MIC Project Weeks

Domainadaptation ⭐ 27

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

Brain Tumor Segmentation Keras ⭐ 20

Keras implementation of the multi-channel cascaded architecture introduced in the paper "Brain Tumor Segmentation with Deep Neural Networks"

Mousemorph ⭐ 19

Tools for MRI mouse brain morphometry

Framework for medical image segmentation using deep neural networks

Tensorflow implementation of paper: A Hierarchical Approach for Generating Descriptive Image Paragraphs

1-89 of 89 projects

Advertising 📦 10

Application Programming Interfaces 📦 124

Applications 📦 192

Artificial Intelligence 📦 78

Blockchain 📦 73

Build Tools 📦 113

Cloud Computing 📦 80

Code Quality 📦 28

Collaboration 📦 32

Command Line Interface 📦 49

Community 📦 83

Companies 📦 60

Compilers 📦 63

Computer Science 📦 80

Configuration Management 📦 42

Content Management 📦 175

Control Flow 📦 213

Data Formats 📦 78

Data Processing 📦 276

Data Storage 📦 135

Economics 📦 64

Frameworks 📦 215

Graphics 📦 110

Hardware 📦 152

Integrated Development Environments 📦 49

Learning Resources 📦 166

Libraries 📦 129

Lists Of Projects 📦 22

Machine Learning 📦 347

Mapping 📦 64

Marketing 📦 15

Mathematics 📦 55

Messaging 📦 98

Networking 📦 315

Operating Systems 📦 89

Operations 📦 121

Package Managers 📦 55

Programming Languages 📦 245

Runtime Environments 📦 100

Science 📦 42

Security 📦 396

Social Media 📦 27

Software Architecture 📦 72

Software Development 📦 72

Software Performance 📦 58

Software Quality 📦 133

Text Editors 📦 49

Text Processing 📦 136

User Interface 📦 330

User Interface Components 📦 514

Version Control 📦 30

Virtualization 📦 71

Web Browsers 📦 42

Web Servers 📦 26

Web User Interface 📦 210