Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About

The Top 19 Python Proteomics Mass Spectrometry Open Source Projects

Open source projects categorized as Python Proteomics Mass Spectrometry
Categories > Mass Spectrometry
Categories > Proteomics
Alphamap ⭐ 66
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
total releases 10most recent commit 3 months ago
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8most recent commit 3 months agopypi depthcharge-ms} Downloads
Ursgal ⭐ 37
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
most recent commit 2 years ago
Moff ⭐ 31
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
most recent commit 3 years ago
Pyqms ⭐ 26
pyQms, generalized, fast and accurate mass spectrometry data quantification
most recent commit 5 months ago
Pyprophet ⭐ 25
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
dependent packages 2total releases 73most recent commit 6 months agopypi pyprophet} Downloads
Alphabase ⭐ 20
Infrastructure of AlphaX ecosystem
most recent commit 3 months ago
Psm_utils ⭐ 19
Common utilities for parsing and handling peptide-spectrum matches and search engine results in Python
most recent commit 5 months ago
Mzspeclib ⭐ 18
mzSpecLib: A standard format to exchange/distribute spectral libraries
most recent commit 7 months ago
Dlomix ⭐ 17
Python framework for Deep Learning in Proteomics
most recent commit 5 months ago
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22most recent commit 4 months agopypi sdrf-pipelines} Downloads
Dart Id ⭐ 10
DART-ID: retention time alignment and peptide identification confidence updates
most recent commit a year ago
Pridepy ⭐ 9
Python client for PRIDE Archive Rest API.
total releases 1most recent commit 8 months ago
Ionmob ⭐ 8
An open-source prediction framework for peptide ion collision cross section (CCS) values with python.
most recent commit 7 months ago
Specter ⭐ 8
Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics
most recent commit 6 years ago
Prospect ⭐ 7
Proteomics Mass Spectrometry Datasets for Machine Learning
most recent commit 10 months ago
Py Pgatk ⭐ 6
Python tools for proteogenomics analysis toolkit
most recent commit a year ago
Peptacular ⭐ 5
A spectacularly simple package for working with peptide sequences.
most recent commit 4 months ago
Synthedia ⭐ 5
Create synthetic DIA LC-MS/MS for proteomics experiments
total releases 4most recent commit a year ago
The 3 Most Depended On Python Proteomics Mass Spectrometry Open Source Projects
Pyprophet ⭐ 25
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
dependent packages 2total releases 73latest release December 15, 2022most recent commit 6 months agopypi pyprophet} Downloads
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 4 months agopypi sdrf-pipelines} Downloads
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8latest release August 19, 2023most recent commit 3 months agopypi depthcharge-ms} Downloads
The 6 Latest Releases In Python Proteomics Mass Spectrometry Open Source Projects
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 4 months agopypi sdrf-pipelines} Downloads
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8latest release August 19, 2023most recent commit 3 months agopypi depthcharge-ms} Downloads
Pyprophet ⭐ 25
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
dependent packages 2total releases 73latest release December 15, 2022most recent commit 6 months agopypi pyprophet} Downloads
Synthedia ⭐ 5
Create synthetic DIA LC-MS/MS for proteomics experiments
total releases 4latest release November 07, 2022most recent commit a year ago
Pridepy ⭐ 9
Python client for PRIDE Archive Rest API.
total releases 1latest release January 28, 2021most recent commit 8 months ago
Categories
Privacy | About | Terms | Follow Us On Twitter

Downloads, Dependent Repos, Dependent Packages, Total Releases, Latest Releases data powered by Libraries.io.

Copyright 2018-2024 Awesome Open Source.  All rights reserved.