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The Top 10 Mass Spectrometry Proteomics Open Source Projects
Open source projects categorized as Mass Spectrometry Proteomics
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Mass Spectrometry
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OpenMS/OpenMS
⭐
438
The codebase of the OpenMS project
dependent packages
0
total releases
0
most recent commit
over 2 years ago
lazear/sage
⭐
173
Proteomics search & quantification so fast that it feels like magic
dependent packages
0
total releases
0
most recent commit
over 2 years ago
Nesvilab/FragPipe
⭐
149
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
dependent packages
0
total releases
0
most recent commit
over 2 years ago
MannLabs/alphapept
⭐
136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
lgatto/MSnbase
⭐
115
Base Classes and Functions for Mass Spectrometry and Proteomics
dependent packages
0
total releases
0
most recent commit
over 2 years ago
Nesvilab/philosopher
⭐
104
A complete toolkit for shotgun proteomics data analysis
dependent packages
0
total releases
0
most recent commit
over 2 years ago
Nesvilab/MSFragger
⭐
83
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
dependent packages
0
total releases
0
most recent commit
over 2 years ago
lgatto/RforProteomics
⭐
69
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
dependent packages
0
total releases
0
most recent commit
about 3 years ago
MannLabs/alphamap
⭐
66
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
jpquast/protti
⭐
50
Picotti lab data analysis package.
dependent packages
0
total releases
0
most recent commit
over 2 years ago
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