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The Top 23 Proteomics Mass Spectrometry Open Source Projects

Open source projects categorized as Proteomics Mass Spectrometry
Categories > Mass Spectrometry
Categories > Proteomics
Openms ⭐ 438
The codebase of the OpenMS project
dependent packages 22total releases 18most recent commit 3 months agopypi pyopenms} Downloads
Sage ⭐ 173
Proteomics search & quantification so fast that it feels like magic
most recent commit 3 months ago
Fragpipe ⭐ 149
A cross-platform Graphical User Interface (GUI) for running MSFragger and Philosopher - powered pipeline for comprehensive analysis of shotgun proteomics data
most recent commit 3 months ago
Alphapept ⭐ 136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
total releases 17most recent commit 5 months ago
Msnbase ⭐ 115
Base Classes and Functions for Mass Spectrometry and Proteomics
most recent commit 4 months ago
Philosopher ⭐ 104
A complete toolkit for shotgun proteomics data analysis
most recent commit 3 months ago
Msfragger ⭐ 83
Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics
most recent commit 4 months ago
Rforproteomics ⭐ 69
Using R and Bioconductor packages for the analysis and comprehension of proteomics data.
most recent commit a year ago
Alphamap ⭐ 66
An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.
total releases 10most recent commit 3 months ago
Protti ⭐ 50
Picotti lab data analysis package.
total releases 7most recent commit 5 months ago
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8most recent commit 3 months agopypi depthcharge-ms} Downloads
Ursgal ⭐ 37
Ursgal - universal Python module combining common bottom-up proteomics tools for large-scale analysis
most recent commit 2 years ago
Alphapeptstats ⭐ 37
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
total releases 31most recent commit 5 months ago
Proteomicsml ⭐ 33
Community-curated tutorials and datasets for ML in proteomics
most recent commit 10 months ago
Rawdiag ⭐ 33
Brings Orbitrap Mass Spectrometry Data to Life; Multi-platform, Fast and Colorful R package.
most recent commit 8 months ago
Moff ⭐ 31
A modest Feature Finder (moFF) to extract MS1 intensities from Thermo raw file
most recent commit 3 years ago
Spectra ⭐ 29
Low level infrastructure to handle MS spectra
most recent commit 4 months ago
Mhcquant ⭐ 28
Identify and quantify MHC eluted peptides from mass spectrometry raw data
most recent commit 3 months ago
Lfq Analyst ⭐ 27
The repo for LFQ-Analyst
most recent commit 4 months ago
Pyqms ⭐ 26
pyQms, generalized, fast and accurate mass spectrometry data quantification
most recent commit 4 months ago
Informed Proteomics ⭐ 25
Top down / bottom up, MS/MS analysis tool for DDA and DIA mass spectrometry data
most recent commit 2 years ago
Pyprophet ⭐ 25
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
dependent packages 2total releases 73most recent commit 6 months agopypi pyprophet} Downloads
Alphabase ⭐ 20
Infrastructure of AlphaX ecosystem
most recent commit 3 months ago
The 6 Most Depended On Proteomics Mass Spectrometry Open Source Projects
Openms ⭐ 438
The codebase of the OpenMS project
dependent packages 22total releases 18latest release October 13, 2023most recent commit 3 months agopypi pyopenms} Downloads
Pyprophet ⭐ 25
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
dependent packages 2total releases 73latest release December 15, 2022most recent commit 6 months agopypi pyprophet} Downloads
Rustyms ⭐ 7
A rust library for parsing Pro Forma peptides and matching them against MS spectra
dependent packages 1total releases 11latest release December 01, 2023most recent commit 3 months agocargo rustyms} Downloads
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 3 months agopypi sdrf-pipelines} Downloads
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8latest release August 19, 2023most recent commit 3 months agopypi depthcharge-ms} Downloads
Protviz ⭐ 9
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
dependent packages 1total releases 27latest release February 06, 2023most recent commit 4 months ago
The 10 Latest Releases In Proteomics Mass Spectrometry Open Source Projects
Rustyms ⭐ 7
A rust library for parsing Pro Forma peptides and matching them against MS spectra
dependent packages 1total releases 11latest release December 01, 2023most recent commit 3 months agocargo rustyms} Downloads
Alphapept ⭐ 136
A modular, python-based framework for mass spectrometry. Powered by nbdev.
total releases 17latest release November 15, 2023most recent commit 5 months ago
Openms ⭐ 438
The codebase of the OpenMS project
dependent packages 22total releases 18latest release October 13, 2023most recent commit 3 months agopypi pyopenms} Downloads
Mzrecal ⭐ 6
Recalibrate Mass Spectrometry data in mzML format
total releases 9latest release October 10, 2023most recent commit 6 months ago
Sdrf Pipelines ⭐ 12
A repository to convert SDRF proteomics files into pipelines config files
dependent packages 1total releases 22latest release September 17, 2023most recent commit 3 months agopypi sdrf-pipelines} Downloads
Alphapeptstats ⭐ 37
Python Package for the downstream analysis of mass-spectrometry-based proteomics data
total releases 31latest release August 21, 2023most recent commit 5 months ago
Depthcharge ⭐ 47
A deep learning toolkit for mass spectrometry
dependent packages 1total releases 8latest release August 19, 2023most recent commit 3 months agopypi depthcharge-ms} Downloads
Sdk ⭐ 9
Software solution for common top-down proteomics tasks
total releases 46latest release March 09, 2023most recent commit 3 months ago
Protviz ⭐ 9
Visualizing and Analyzing Mass Spectrometry Related Data in Proteomics
dependent packages 1total releases 27latest release February 06, 2023most recent commit 4 months ago
Pyprophet ⭐ 25
PyProphet: Semi-supervised learning and scoring of OpenSWATH results.
dependent packages 2total releases 73latest release December 15, 2022most recent commit 6 months agopypi pyprophet} Downloads
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