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The Top 23 Linkml Open Source Projects

Open source projects categorized as Linkml
Categories > Linkml
Ontogpt ⭐ 435
LLM-based ontological extraction tools, including SPIRES
most recent commit 5 months ago
Linkml ⭐ 244
Linked Open Data Modeling Language
dependent packages 40total releases 108most recent commit 5 months agopypi linkml} Downloads
Biolink Model ⭐ 149
Schema and generated objects for biolink data model and upper ontology
dependent packages 1total releases 6most recent commit 5 months agopypi BiolinkMG} Downloads
Sssom ⭐ 124
Simple Standard for Sharing Ontology Mappings
most recent commit 5 months ago
Dataharmonizer ⭐ 81
A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
dependent packages 2total releases 6most recent commit 5 months agonpm data-harmonizer} Downloads
Koza ⭐ 38
Data transformation framework for LinkML data models
total releases 27most recent commit 6 months ago
Sssom Py ⭐ 38
Python toolkit for SSSOM mapping format
dependent packages 5total releases 54most recent commit 5 months agopypi sssom} Downloads
Schemasheets ⭐ 33
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
dependent packages 4total releases 23most recent commit 9 months agopypi schemasheets} Downloads
Semantic Sql ⭐ 32
SQL and SQLite builds of OWL ontologies
most recent commit 7 months ago
Schema Automator ⭐ 27
Automated assistance for the schema development lifecycle
most recent commit 5 months ago
Linkml Model ⭐ 23
Link Modeling Language (LinkML) model
dependent packages 2total releases 26most recent commit 6 months agopypi linkml-model} Downloads
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70most recent commit 5 months agopypi nmdc-schema} Downloads
Linkml Runtime ⭐ 17
Runtime support for linkml generated models
dependent packages 56total releases 114most recent commit 5 months agopypi linkml-runtime} Downloads
Ghga Metadata Schema ⭐ 13
Metadata schema for the German Human Genome-Phenome Archive (GHGA)
most recent commit 7 months ago
Ccdhmodel ⭐ 11
CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
total releases 23most recent commit 2 years ago
Linkml Transformer ⭐ 11
Mapping between LinkML schemas
most recent commit 5 months ago
Monochrom ⭐ 10
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
most recent commit a year ago
Linkml Registry ⭐ 9
Registry of schemas that use LinkML
most recent commit 8 months ago
Linkml Project Template ⭐ 9
A template for LinkML projects using poetry and gen-project
most recent commit 2 years ago
Prefixmaps ⭐ 8
Semantic prefix map registry
most recent commit 5 months ago
Agr_curation_schema ⭐ 7
Schema repository for the Alliance of Genome Resources persistent data store
most recent commit 6 months ago
Json Flattener ⭐ 6
Python library for denormalizing nested dicts or json objects to tables and back
dependent packages 2total releases 5most recent commit a year agopypi json-flattener} Downloads
Metadata ⭐ 6
Collation of metadata examples and notes for the project
most recent commit 10 months ago
The 9 Most Depended On Linkml Open Source Projects
Linkml Runtime ⭐ 17
Runtime support for linkml generated models
dependent packages 56total releases 114latest release November 06, 2023most recent commit 5 months agopypi linkml-runtime} Downloads
Linkml ⭐ 244
Linked Open Data Modeling Language
dependent packages 40total releases 108latest release December 12, 2023most recent commit 5 months agopypi linkml} Downloads
Sssom Py ⭐ 38
Python toolkit for SSSOM mapping format
dependent packages 5total releases 54latest release November 20, 2023most recent commit 5 months agopypi sssom} Downloads
Schemasheets ⭐ 33
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
dependent packages 4total releases 23latest release September 29, 2023most recent commit 9 months agopypi schemasheets} Downloads
Linkml Model ⭐ 23
Link Modeling Language (LinkML) model
dependent packages 2total releases 26latest release May 06, 2022most recent commit 6 months agopypi linkml-model} Downloads
Json Flattener ⭐ 6
Python library for denormalizing nested dicts or json objects to tables and back
dependent packages 2total releases 5latest release February 26, 2022most recent commit a year agopypi json-flattener} Downloads
Biolink Model ⭐ 149
Schema and generated objects for biolink data model and upper ontology
dependent packages 1total releases 6latest release December 05, 2018most recent commit 5 months agopypi BiolinkMG} Downloads
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70latest release June 16, 2022most recent commit 5 months agopypi nmdc-schema} Downloads
The 10 Latest Releases In Linkml Open Source Projects
Linkml ⭐ 244
Linked Open Data Modeling Language
dependent packages 40total releases 108latest release December 12, 2023most recent commit 5 months agopypi linkml} Downloads
Koza ⭐ 38
Data transformation framework for LinkML data models
total releases 27latest release November 22, 2023most recent commit 6 months ago
Sssom Py ⭐ 38
Python toolkit for SSSOM mapping format
dependent packages 5total releases 54latest release November 20, 2023most recent commit 5 months agopypi sssom} Downloads
Linkml Runtime ⭐ 17
Runtime support for linkml generated models
dependent packages 56total releases 114latest release November 06, 2023most recent commit 5 months agopypi linkml-runtime} Downloads
Schemasheets ⭐ 33
Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
dependent packages 4total releases 23latest release September 29, 2023most recent commit 9 months agopypi schemasheets} Downloads
Nmdc Schema ⭐ 23
This repository contains the LinkML specification for the NMDC schema and the artifacts generated by LinkML.
dependent packages 1total releases 70latest release June 16, 2022most recent commit 5 months agopypi nmdc-schema} Downloads
Linkml Model ⭐ 23
Link Modeling Language (LinkML) model
dependent packages 2total releases 26latest release May 06, 2022most recent commit 6 months agopypi linkml-model} Downloads
Sparqlfun ⭐ 5
sparql templates for linkml (alpha)
total releases 4latest release April 30, 2022most recent commit 2 years ago
Json Flattener ⭐ 6
Python library for denormalizing nested dicts or json objects to tables and back
dependent packages 2total releases 5latest release February 26, 2022most recent commit a year agopypi json-flattener} Downloads
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