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The Top 23 Immunology Open Source Projects

Open source projects categorized as Immunology
Categories > Immunology
Mixcr ⭐ 291
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
most recent commit 4 months ago
Immunarch ⭐ 256
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
most recent commit 9 months ago
Awesome Vdj ⭐ 150
📚 Tools and databases for analyzing HLA and VDJ genes.
most recent commit 8 months ago
Vdjdb Db ⭐ 122
🗂️ [vdjdb.cdr3.net is down for maintenance] Git-based TCR database storage & management. Submissions welcome!
most recent commit 7 months ago
Covid19 Review ⭐ 117
A collaborative review of the emerging COVID-19 literature. Join the chat here:
most recent commit 10 months ago
Flowkit ⭐ 114
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
total releases 29most recent commit a year ago
Vdjtools ⭐ 113
Post-analysis of immune repertoire sequencing data
most recent commit a year ago
Deeptcr ⭐ 62
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
total releases 136most recent commit 2 years ago
Migec ⭐ 40
A RepSeq processing swiss-knife
most recent commit a year ago
Migmap ⭐ 38
HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
most recent commit 6 years ago
Shiny Iatlas ⭐ 36
An interactive web portal for exploring immuno-oncology data
most recent commit 3 years ago
Antigen.garnish ⭐ 35
most recent commit 2 years ago
Igor ⭐ 35
IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
most recent commit 3 years ago
Epitopepredict ⭐ 35
Python package and command line tool for epitope prediction
dependent packages 1total releases 5most recent commit 2 years agopypi epitopepredict} Downloads
Hlatyping ⭐ 34
Precision HLA typing from next-generation sequencing data
most recent commit 2 years ago
Sscclust ⭐ 32
simpler single cell RNAseq data clustering
most recent commit a year ago
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12most recent commit 4 years ago
Gigasom.jl ⭐ 26
Huge-scale, high-performance flow cytometry clustering in Julia
most recent commit a year ago
Immunespacer ⭐ 25
An R Interface to the ImmuneSpace database portal
most recent commit a year ago
Titan ⭐ 24
Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2021)
most recent commit 10 months ago
Compairr ⭐ 20
Comparison of Adaptive Immune Receptor Repertoires
most recent commit a year ago
Vdjviz ⭐ 19
A lightweight immune repertoire browser
most recent commit 4 years ago
Djvdj ⭐ 19
An R package to analyze single-cell V(D)J data
most recent commit 7 months ago
The 2 Most Depended On Immunology Open Source Projects
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12latest release March 25, 2019most recent commit 4 years ago
Epitopepredict ⭐ 35
Python package and command line tool for epitope prediction
dependent packages 1total releases 5latest release September 28, 2020most recent commit 2 years agopypi epitopepredict} Downloads
The 6 Latest Releases In Immunology Open Source Projects
Flowkit ⭐ 114
A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces
total releases 29latest release September 01, 2022most recent commit a year ago
Deeptcr ⭐ 62
Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
total releases 136latest release April 29, 2022most recent commit 2 years ago
Epitopepredict ⭐ 35
Python package and command line tool for epitope prediction
dependent packages 1total releases 5latest release September 28, 2020most recent commit 2 years agopypi epitopepredict} Downloads
Tcr ⭐ 31
[DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.
dependent packages 3total releases 12latest release March 25, 2019most recent commit 4 years ago
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