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The Top 23 Imagej Open Source Projects

Open source projects categorized as Imagej
Categories > Imagej
Imagepy ⭐ 1,179
Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy
total releases 9most recent commit 2 years ago
Qupath ⭐ 934
QuPath - Bioimage analysis & digital pathology
most recent commit 5 months ago
Tifffile ⭐ 436
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
dependent packages 620total releases 123most recent commit 6 months agopypi tifffile} Downloads
Morpholibj ⭐ 95
Collection of mathematical morphology methods and plugins for ImageJ
most recent commit 5 months ago
Awesome Biological Image Analysis ⭐ 74
A curated list of software, tools, pipelines, plugins etc. for image analysis related to biological questions.
most recent commit 5 months ago
Imagej.js ⭐ 70
ImageJS--Image analysis in the browser with ImageJ
most recent commit 6 months ago
Sciview ⭐ 59
sciview is a tool for visualization and interaction with ND image and mesh data
most recent commit 5 months ago
Knip ⭐ 47
KNIME Image Processing Extension
most recent commit a year ago
Roifile ⭐ 46
Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile
dependent packages 12total releases 14most recent commit 5 months agopypi roifile} Downloads
Thermimagej ⭐ 31
ImageJ functions and macros for working with thermal image files
most recent commit a year ago
Imagej_macros_and_scripts ⭐ 26
ImageJ macros and scripts written at the imaging facility MRI
most recent commit 5 months ago
Edge Detection Project ⭐ 25
Tiny Image in Javascript - Edge Detection Algorithms
most recent commit 6 years ago
Opencv Rolling Ball ⭐ 23
Fully Ported to Python from ImageJ's Background Subtractor. Rolling ball and sliding paraboloid background subtraction algorithms.
total releases 2most recent commit 6 years ago
Flika ⭐ 20
An interactive image processing program for biologists written in Python.
most recent commit 8 months ago
Napari Imagej ⭐ 20
Use ImageJ functionality from napari
most recent commit 9 months ago
Bonej2 ⭐ 19
Plugins for bone image analysis
most recent commit 8 months ago
Zstackdepthcolorcode ⭐ 19
Z-stack Depth Colorcode ImageJ FIJI plugin
most recent commit 3 years ago
Scripts ⭐ 18
🔬🍸 Home of the ImageJ BAR: A collection of Broadly Applicable Routines for ImageJ
most recent commit 2 years ago
Ijtiff ⭐ 18
An R Package for general purpose TIFF file I/O which plays nice with ImageJ
dependent packages 3total releases 26most recent commit 6 months ago
Ijp Color ⭐ 17
Plugins for ImageJ - color space conversions and color calibration
dependent packages 1total releases 11most recent commit 5 months ago
Imagej Macros ⭐ 16
Macros for ImageJ/FIJI
most recent commit 7 months ago
Snt ⭐ 15
The ImageJ framework for semi-automated tracing and analysis of neurons
most recent commit 3 years ago
Color Blind Luts ⭐ 15
Color blind friendly lookup tables for Fiji/ImageJ
most recent commit a year ago
The 4 Most Depended On Imagej Open Source Projects
Tifffile ⭐ 436
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
dependent packages 620total releases 123latest release December 09, 2023most recent commit 6 months agopypi tifffile} Downloads
Roifile ⭐ 46
Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile
dependent packages 12total releases 14latest release August 31, 2023most recent commit 5 months agopypi roifile} Downloads
Ijtiff ⭐ 18
An R Package for general purpose TIFF file I/O which plays nice with ImageJ
dependent packages 3total releases 26latest release June 28, 2021most recent commit 6 months ago
Ijp Color ⭐ 17
Plugins for ImageJ - color space conversions and color calibration
dependent packages 1total releases 11latest release November 25, 2021most recent commit 5 months ago
The 10 Latest Releases In Imagej Open Source Projects
Tifffile ⭐ 436
Read and write TIFF files. Forked from https://pypi.org/project/tifffile
dependent packages 620total releases 123latest release December 09, 2023most recent commit 6 months agopypi tifffile} Downloads
Mia ⭐ 11
Modular, object-based analysis for ImageJ/Fiji
total releases 11latest release November 28, 2023most recent commit 5 months ago
Roifile ⭐ 46
Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile
dependent packages 12total releases 14latest release August 31, 2023most recent commit 5 months agopypi roifile} Downloads
Fijirelax ⭐ 9
FijiRelax: 3D+t multi-echo spin-echo sequences MRI analysis
total releases 6latest release January 20, 2023most recent commit a year ago
Imagingbook Public ⭐ 11
Image processing software for textbooks by W. Burger & M. Burge
total releases 5latest release January 11, 2023most recent commit a year ago
Ijp Color ⭐ 17
Plugins for ImageJ - color space conversions and color calibration
dependent packages 1total releases 11latest release November 25, 2021most recent commit 5 months ago
Ijp Toolkit ⭐ 11
ijp-toolkit general purpose plugins for ImageJ (also known as ij-plugins_toolkit)
total releases 6latest release August 05, 2021most recent commit 2 years ago
Ijtiff ⭐ 18
An R Package for general purpose TIFF file I/O which plays nice with ImageJ
dependent packages 3total releases 26latest release June 28, 2021most recent commit 6 months ago
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