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The Top 23 Histopathology Open Source Projects

Open source projects categorized as Histopathology
Categories > Histopathology
Clam ⭐ 786
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
most recent commit 6 months ago
Pathml ⭐ 341
Tools for computational pathology
total releases 15most recent commit 5 months ago
Hipt ⭐ 341
Hierarchical Image Pyramid Transformer - CVPR 2022 (Oral)
most recent commit a year ago
Tiatoolbox ⭐ 277
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
dependent packages 1total releases 23most recent commit 5 months agopypi tiatoolbox} Downloads
Dsmil Wsi ⭐ 224
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
most recent commit a year ago
Slideflow ⭐ 193
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
total releases 59most recent commit 5 months ago
Nucleisegmentation ⭐ 152
cGAN-based Multi Organ Nuclei Segmentation
most recent commit 2 years ago
Pathomicfusion ⭐ 148
Fusing Histology and Genomics via Deep Learning - IEEE TMI
most recent commit 2 years ago
Torchstain ⭐ 100
Stain normalization tools for histological analysis and computational pathology
total releases 5most recent commit 3 months ago
Toad ⭐ 94
AI-based pathology predicts origins for cancers of unknown primary - Nature
most recent commit 3 years ago
Quilt1m ⭐ 80
[NeurIPS 2023 Oral] Quilt-1M: One Million Image-Text Pairs for Histopathology.
most recent commit 5 months ago
Pdl ⭐ 72
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
most recent commit 10 months ago
Sish ⭐ 72
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
most recent commit a year ago
Pathology Whole Slide Data ⭐ 69
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
total releases 16most recent commit 5 months ago
Histopathology Datasets ⭐ 65
Ressources of histopathology datasets
most recent commit 7 months ago
Tcga_segmentation ⭐ 57
Whole Slide Image segmentation with weakly supervised multiple instance learning on TCGA | MICCAI2020 https://arxiv.org/abs/2004.05024
most recent commit 3 years ago
Patch Gcn ⭐ 51
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
most recent commit 2 years ago
Self Supervised Vit Path ⭐ 50
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)
most recent commit 2 years ago
Pathology Gan ⭐ 47
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'
most recent commit 3 years ago
Pathology He Auto Augment ⭐ 37
H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.
most recent commit a year ago
Ssl_cr_histo ⭐ 32
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
most recent commit 2 years ago
Stainlib ⭐ 25
Python 3 library for the augmentation & normalization of H&E images
most recent commit 2 years ago
Digitalhistopath ⭐ 23
most recent commit 2 years ago
The 7 Latest Releases In Histopathology Open Source Projects
Slideflow ⭐ 193
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
total releases 59latest release January 11, 2024most recent commit 5 months ago
Tiatoolbox ⭐ 277
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
dependent packages 1total releases 23latest release July 25, 2023most recent commit 5 months agopypi tiatoolbox} Downloads
Pathml ⭐ 341
Tools for computational pathology
total releases 15latest release May 30, 2023most recent commit 5 months ago
Torchstain ⭐ 100
Stain normalization tools for histological analysis and computational pathology
total releases 5latest release June 15, 2021most recent commit 3 months ago
Pado ⭐ 8
PAthological Data Obsession - cloud native digital pathology datasets
total releases 9latest release February 17, 2015most recent commit a year ago
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