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The Top 23 Gwas Open Source Projects

Open source projects categorized as Gwas
Categories > Gwas
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Glow ⭐ 251
An open-source toolkit for large-scale genomic analysis
dependent packages 1total releases 8most recent commit 3 months ago
Sgkit ⭐ 194
Statistical genetics toolkit
dependent packages 1total releases 7most recent commit 4 months agopypi sgkit} Downloads
Gwa_tutorial ⭐ 184
A comprehensive tutorial about GWAS and PRS
most recent commit 4 years ago
Prsice ⭐ 151
A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores
most recent commit 8 months ago
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6most recent commit 8 months ago
Locuszoom ⭐ 132
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
dependent packages 2total releases 46most recent commit a year agonpm locuszoom} Downloads
Gwas_scripts ⭐ 127
Codebook from my GWAS cookbook
most recent commit 2 years ago
Variantspark ⭐ 121
machine learning for genomic variants
total releases 38most recent commit a year ago
Mtag ⭐ 118
Python command line tool for Multi-Trait Analysis of GWAS (MTAG)
most recent commit 10 months ago
Ldblockshow ⭐ 102
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
most recent commit 7 months ago
Rvtests ⭐ 95
Rare variant test software for next generation sequencing data
most recent commit 3 years ago
Pyseer ⭐ 81
SEER, reimplemented in python 🐍🔮
total releases 18most recent commit 6 months ago
Tiledb Vcf ⭐ 79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
most recent commit 3 months ago
Scdrs ⭐ 75
Single-cell disease relevance score (scDRS)
total releases 2most recent commit 5 months ago
Scoary ⭐ 71
Pan-genome wide association studies
total releases 16most recent commit 7 years ago
Polyfun ⭐ 69
PolyFun (POLYgenic FUNctionally-informed fine-mapping)
most recent commit 5 months ago
Ukb_rap ⭐ 68
Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.
most recent commit 4 months ago
Geneticsmakie.jl ⭐ 66
🧬High-performance genetics- and genomics-related data visualization using Makie.jl
most recent commit 3 months ago
Imputationserver ⭐ 66
Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves user experience and productivity
most recent commit 4 months ago
Vcf2gwas ⭐ 62
Python API for comprehensive GWAS analysis using GEMMA
most recent commit 8 months ago
Mungesumstats ⭐ 59
Rapid standardisation and quality control of GWAS or QTL summary statistics
most recent commit 3 months ago
Nf Gwas ⭐ 52
A nextflow pipeline to perform state-of-the-art genome-wide association studies.
most recent commit 3 months ago
The 7 Most Depended On Gwas Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6latest release August 23, 2023most recent commit 8 months ago
Qmplot ⭐ 29
A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.
dependent packages 3total releases 21latest release August 11, 2022most recent commit 4 months agopypi qmplot} Downloads
Locuszoom ⭐ 132
A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.
dependent packages 2total releases 46latest release March 16, 2022most recent commit a year agonpm locuszoom} Downloads
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
Sgkit ⭐ 194
Statistical genetics toolkit
dependent packages 1total releases 7latest release April 07, 2022most recent commit 4 months agopypi sgkit} Downloads
Glow ⭐ 251
An open-source toolkit for large-scale genomic analysis
dependent packages 1total releases 8latest release June 23, 2020most recent commit 3 months ago
The 10 Latest Releases In Gwas Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Mvmapit ⭐ 8
The multivariate MArginal ePIstasis Test
total releases 4latest release September 26, 2023most recent commit 6 months ago
Nonlinear Causal ⭐ 10
nl-causal: nonlinear causal inference based on IV regression in Python
total releases 3latest release September 07, 2023most recent commit 3 months ago
Pcsstools ⭐ 5
Tools for regression using pre-computed summary statistics
total releases 2latest release September 06, 2023most recent commit 8 months ago
Qqman ⭐ 141
An R package for creating Q-Q and manhattan plots from GWAS results
dependent packages 12total releases 6latest release August 23, 2023most recent commit 8 months ago
Haptools ⭐ 13
Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis
total releases 8latest release June 03, 2023most recent commit 3 months ago
Bgdata ⭐ 30
A Suite of Packages for Analysis of Big Genomic Data
dependent packages 2total releases 7latest release March 22, 2023most recent commit 7 months ago
Scdrs ⭐ 75
Single-cell disease relevance score (scDRS)
total releases 2latest release September 19, 2022most recent commit 5 months ago
Quincunx ⭐ 8
quincunx: an R package to query, download and wrangle PGS Catalog data
total releases 4latest release August 14, 2022most recent commit 2 years ago
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