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The Top 23 Genomics Visualization Open Source Projects

Open source projects categorized as Genomics Visualization
Categories > Genomics Visualization
Gggenomes ⭐ 518
A grammar of graphics for comparative genomics
most recent commit 5 months ago
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13most recent commit 5 months agopypi pycirclize} Downloads
Karyoploter ⭐ 278
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
most recent commit 5 months ago
Sequenceserver ⭐ 259
Intuitive graphical web interface for running BLAST bioinformatics tool (i.e. have your own custom NCBI BLAST site!)
total releases 68most recent commit 4 months ago
Kent ⭐ 197
UCSC Genome Browser source tree. Stable branch: "beta".
most recent commit 4 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23most recent commit 7 months agopypi pygenomeviz} Downloads
Mixomics ⭐ 126
Development repository for the Bioconductor package 'mixOmics '
most recent commit 7 months ago
Igv Snapshot Automator ⭐ 122
Script to automatically create and run IGV snapshot batchscripts
most recent commit a year ago
Jigv ⭐ 115
igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"
most recent commit a year ago
Omicsplayground ⭐ 112
Visual self-service analytics platform for big omics data.
most recent commit 4 months ago
Genomic Interactive Visualization Engine ⭐ 108
Genomic Interactive Visualization Engine
most recent commit 4 years ago
Humanidiogramlibrary ⭐ 70
Resource of human chromosome schematics & images
most recent commit 3 years ago
Radiator ⭐ 53
RADseq Data Exploration, Manipulation and Visualization using R
most recent commit a year ago
Microbetrace ⭐ 53
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
most recent commit 2 years ago
Trackhub ⭐ 47
create, manage, and upload track hubs for use in the UCSC genome browser
dependent packages 3total releases 8most recent commit 2 years agopypi trackhub} Downloads
Covviz ⭐ 42
Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata
total releases 17most recent commit 2 years ago
Genovi ⭐ 40
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
total releases 41most recent commit a year ago
Seqcover ⭐ 38
seqcover allows user to view coverage for hundreds of genes and dozens of samples
most recent commit 3 years ago
G3viz ⭐ 30
Lollipop-diagram to interactively visualize genetic mutations
total releases 9most recent commit 2 years ago
Cellar ⭐ 30
Interactive software tool for the assignment of cell types in single-cell studies.
most recent commit a year ago
Ezancestry ⭐ 28
Easy genetic ancestry predictions in Python
most recent commit 2 years ago
Deepstats ⭐ 27
deepStats: a stastitical toolbox for deeptools and genomic signals
most recent commit 3 years ago
Jbrowse Jupyter ⭐ 21
A python package for showing JBrowse views
total releases 16most recent commit 6 months ago
The 4 Most Depended On Genomics Visualization Open Source Projects
Trackhub ⭐ 47
create, manage, and upload track hubs for use in the UCSC genome browser
dependent packages 3total releases 8latest release December 21, 2017most recent commit 2 years agopypi trackhub} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 5 months agopypi pycirclize} Downloads
Generator Biojs Webcomponents ⭐ 7
Generate all the boilerplate for your next BioJS tool!
dependent packages 2total releases 4latest release October 14, 2019most recent commit 3 years agonpm generator-biojs-webcomponents} Downloads
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 7 months agopypi pygenomeviz} Downloads
The 10 Latest Releases In Genomics Visualization Open Source Projects
Glue Genes ⭐ 7
glue for genomics and transcriptomics
total releases 7latest release November 22, 2023most recent commit 6 months ago
Pygenomeviz ⭐ 177
A genome visualization python package for comparative genomics
dependent packages 1total releases 23latest release October 28, 2023most recent commit 7 months agopypi pygenomeviz} Downloads
Pycirclize ⭐ 476
Circular visualization in Python (Circos Plot, Chord Diagram)
dependent packages 3total releases 13latest release July 20, 2023most recent commit 5 months agopypi pycirclize} Downloads
Genovi ⭐ 40
GenoVi, an automated customizable circular genome visualizer for bacteria and archaea
total releases 41latest release December 16, 2022most recent commit a year ago
Jbrowse Jupyter ⭐ 21
A python package for showing JBrowse views
total releases 16latest release December 03, 2022most recent commit 6 months ago
Mgcplotter ⭐ 20
Microbial Genome Circular plotting tool for comparative genomics using Circos
total releases 3latest release April 19, 2022most recent commit a year ago
Gbkviz ⭐ 7
Easy-to-use web application for visualization and comparison of genomes in Genbank file
total releases 12latest release March 31, 2022most recent commit 2 years ago
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