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The Top 23 Genome Annotation Open Source Projects

Open source projects categorized as Genome Annotation
Categories > Genome Annotation
Jbrowse ⭐ 437
Full-featured and stable genome browser built with JavaScript and HTML5.
dependent packages 2total releases 30most recent commit a year agonpm @gmod/jbrowse} Downloads
Prokka ⭐ 415
⚡ ♒ Rapid prokaryotic genome annotation
most recent commit 4 years ago
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37most recent commit 5 months ago
Edta ⭐ 294
Extensive de-novo TE Annotator
most recent commit 5 months ago
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13most recent commit 7 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18most recent commit 4 years ago
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21most recent commit 7 months ago
Ltr_retriever ⭐ 167
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
most recent commit 6 months ago
Toga ⭐ 120
TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.
most recent commit 5 months ago
Ga4gh Server ⭐ 95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
total releases 18most recent commit 6 years ago
Earlgrey ⭐ 90
Earl Grey: A fully automated TE curation and annotation pipeline
most recent commit 5 months ago
Genomegtftools ⭐ 52
convert various features into a GFF-like file for use in genome browsers
most recent commit 7 months ago
Rapt ⭐ 51
Read Assembly and Annotation Pipeline Tool
most recent commit a year ago
Finder ⭐ 44
A fully automated gene annotator from RNA-Seq expression data
most recent commit a year ago
Pipelines Nextflow ⭐ 41
A set of workflows written in Nextflow for Genome Annotation.
most recent commit 5 months ago
Ltr_finder_parallel ⭐ 39
A parallel wrapper for LTR_FINDER
most recent commit 6 months ago
Gawn ⭐ 37
Genome Annotation Without Nightmares
most recent commit 8 months ago
Pinfish ⭐ 36
Tools to annotate genomes using long read transcriptomics data
total releases 1most recent commit 4 years ago
Edge ⭐ 35
Efficiently keep track of changes to genomes
total releases 68most recent commit 2 years ago
Transposome ⭐ 30
A toolkit for annotation of transposable element families from unassembled sequence reads
most recent commit a year ago
Gcmodeller ⭐ 27
GCModeller: genomics CAD(Computer Assistant Design) Modeller system in .NET language
most recent commit 5 months ago
Lrsday ⭐ 27
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
most recent commit 9 months ago
Tephra ⭐ 26
A tool for discovering transposable elements and describing patterns of genome evolution
most recent commit a year ago
The 2 Most Depended On Genome Annotation Open Source Projects
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 7 months ago
Jbrowse ⭐ 437
Full-featured and stable genome browser built with JavaScript and HTML5.
dependent packages 2total releases 30latest release July 12, 2019most recent commit a year agonpm @gmod/jbrowse} Downloads
The 10 Latest Releases In Genome Annotation Open Source Projects
Biomartr ⭐ 198
Genomic Data Retrieval with R
dependent packages 3total releases 21latest release December 02, 2023most recent commit 7 months ago
Bakta ⭐ 365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
total releases 37latest release November 29, 2023most recent commit 5 months ago
Peaks2utr ⭐ 12
A robust Python tool for the annotation of 3’ UTRs
total releases 13latest release September 07, 2023most recent commit 5 months ago
Hite ⭐ 5
High-precision TE Annotator
total releases 1latest release February 23, 2023most recent commit 5 months ago
Edge ⭐ 35
Efficiently keep track of changes to genomes
total releases 68latest release October 12, 2022most recent commit 2 years ago
Funannotate ⭐ 261
Eukaryotic Genome Annotation Pipeline
total releases 13latest release August 10, 2022most recent commit 7 months ago
Pygeno ⭐ 242
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
total releases 18latest release December 15, 2021most recent commit 4 years ago
Ga4gh Server ⭐ 95
Reference implementation of the APIs defined in ga4gh-schemas. RETIRED 2018-01-24
total releases 18latest release December 15, 2021most recent commit 6 years ago
Pinfish ⭐ 36
Tools to annotate genomes using long read transcriptomics data
total releases 1latest release March 16, 2020most recent commit 4 years ago
Jbrowse ⭐ 437
Full-featured and stable genome browser built with JavaScript and HTML5.
dependent packages 2total releases 30latest release July 12, 2019most recent commit a year agonpm @gmod/jbrowse} Downloads
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