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The Top 23 Genetics Open Source Projects

Open source projects categorized as Genetics
Categories > Genetics
Bcfanno ⭐ 12
A fast and flexible program to annotate/interpret genetic variants in VCF/BCF file
most recent commit 4 years ago
Ldserver ⭐ 12
Fast API server for calculating linkage disequilibrium
most recent commit 2 years ago
Region Plot ⭐ 12
A tool to plot significant regions of GWAS
most recent commit 4 years ago
Terapca ⭐ 12
TeraPCA is a multithreaded C++ software suite based on Intel's MKL library (or any other BLAS and/or LAPACK distribution). TeraPCA features no dependencies to external libraries and combines the robustness of subspace iteration with the power of randomization.
most recent commit 2 years ago
Seave ⭐ 12
Seave is a web platform that enables genetic variants to be easily filtered and annotated with in silico pathogenicity prediction scores and annotations from popular disease databases. Seave stores genomic variation of all types and sizes, and allows filtering for specific inheritance patterns, quality values, allele frequencies and gene lists. Seave is open source and deployable locally, or on a cloud computing provider, and works readily with gene panel, exome and whole genome data, scaling fr
most recent commit 6 years ago
Timesweeper ⭐ 12
Python package for detecting positive selective sweeps using time-series genomics sampling data.
total releases 6most recent commit a year ago
Biomarkers ⭐ 11
Genetics of blood and urine biomarkers in the UK Biobank
most recent commit 3 years ago
Bigtop ⭐ 11
A Manhattan plot in colorful virtual reality that adds frequency expression
most recent commit 4 years ago
Libflagstats ⭐ 11
Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.
total releases 5most recent commit 4 years ago
Germinate Vue ⭐ 11
Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.
most recent commit 4 months ago
Sushie ⭐ 11
Software to perform multi-ancestry SNP fine-mapping on molecular data
most recent commit 4 months ago
R ⭐ 11
R packages
dependent packages 4total releases 50most recent commit 4 months ago
Quetzal Coatl ⭐ 10
A toolbox for C++ devs wanting to build geospatial population genetics simulators !
most recent commit 3 months ago
Hat ⭐ 10
HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
most recent commit a year ago
Gpmap ⭐ 10
A Python API for managing genotype-phenotype map data
dependent packages 3total releases 15most recent commit 9 months agopypi gpmap} Downloads
Positive Selection ⭐ 10
Scripts and procedures for detecting positively selected genes and codons in primates
most recent commit 3 years ago
Banns ⭐ 10
Code and simulations using Biologically Annotated Neural Networks (BANNs)
most recent commit 3 years ago
Rate ⭐ 10
Code for Variable Selection in Black Box Methods with RelATive cEntrality (RATE) Measures
most recent commit 3 years ago
Bedmatrix ⭐ 10
A matrix-like wrapper around PLINK .bed files
dependent packages 9total releases 12most recent commit 4 years ago
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Tostadas ⭐ 10
🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission
most recent commit 5 months ago
Alphabeta ⭐ 10
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
most recent commit a year ago
Epicompare ⭐ 10
Comparison, benchmarking & QC of epigenetic datasets
most recent commit 4 months ago
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