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The Top 23 Python Genetics Open Source Projects

Open source projects categorized as Python Genetics
Categories > Genetics
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146most recent commit 3 months agopypi hail} Downloads
Platypus ⭐ 524
A Free and Open Source Python Library for Multiobjective Optimization
dependent packages 15total releases 6most recent commit 3 months agopypi Platypus-Opt} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32most recent commit 4 months agopypi cellrank} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8most recent commit 2 years ago
Sgkit ⭐ 194
Statistical genetics toolkit
dependent packages 1total releases 7most recent commit 4 months agopypi sgkit} Downloads
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9most recent commit 5 months ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38most recent commit a year ago
Osgenome ⭐ 90
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
most recent commit a year ago
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36most recent commit 2 years agopypi cmapPy} Downloads
Cutevariant ⭐ 85
A standalone and free application to explore genetics variations from VCF file
total releases 40most recent commit 8 months ago
Xpclr ⭐ 64
Code to compute the XP-CLR statistic to infer natural selection
most recent commit 2 years ago
Trifusion ⭐ 61
Streamlining phylogenomic data gathering, processing and visualization
total releases 35most recent commit 6 years ago
Gor ⭐ 37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
most recent commit 4 months ago
Sc2rf ⭐ 34
SARS-Cov-2 Recombinant Finder for fasta sequences
most recent commit 2 years ago
Genetic Trait Detector ⭐ 30
This python script detects known traits in raw human genetic data.
most recent commit 4 months ago
Locuszoom Standalone ⭐ 30
Create regional association plots from GWAS or meta-analysis
most recent commit 4 years ago
Pairsnp ⭐ 29
A set of scripts for calculating pairwise SNP distance
total releases 5most recent commit a year ago
Orthoevolution ⭐ 28
An easy to use and comprehensive python package which aids in the analysis and visualization of orthologous genes. 🐵
total releases 2most recent commit a year ago
Epistasis ⭐ 28
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
dependent packages 1total releases 17most recent commit 9 months agopypi epistasis} Downloads
Darjeeling ⭐ 27
Language-independent, search-based program repair -- just your cup of tea! ☕
total releases 31most recent commit 8 months ago
Genipe ⭐ 26
Genome-wide imputation pipeline
total releases 13most recent commit 3 years ago
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103most recent commit 3 months ago
Structure_threader ⭐ 24
A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".
most recent commit 9 months ago
The 10 Most Depended On Python Genetics Open Source Projects
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Platypus ⭐ 524
A Free and Open Source Python Library for Multiobjective Optimization
dependent packages 15total releases 6latest release November 04, 2022most recent commit 3 months agopypi Platypus-Opt} Downloads
Cmappy ⭐ 86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
dependent packages 5total releases 36latest release February 08, 2019most recent commit 2 years agopypi cmapPy} Downloads
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Gpmap ⭐ 10
A Python API for managing genotype-phenotype map data
dependent packages 3total releases 15latest release July 28, 2020most recent commit 9 months agopypi gpmap} Downloads
Pyplink ⭐ 14
Python module to read binary Plink files.
dependent packages 2total releases 12latest release February 20, 2018most recent commit a year agopypi pyplink} Downloads
Msprime ⭐ 161
Simulate genealogical trees and genomic sequence data using population genetic models
dependent packages 2total releases 9latest release May 20, 2022most recent commit 5 months ago
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Epistasis ⭐ 28
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
dependent packages 1total releases 17latest release August 24, 2021most recent commit 9 months agopypi epistasis} Downloads
The 10 Latest Releases In Python Genetics Open Source Projects
Algebra ⭐ 10
A Boolean Algebra for Genetic Variants
dependent packages 2total releases 18latest release December 04, 2023most recent commit 3 months agopypi mutalyzer-algebra} Downloads
Fwdpy11 ⭐ 25
Forward-time simulation in Python using fwdpp
total releases 103latest release December 01, 2023most recent commit 3 months ago
Cellrank ⭐ 279
CellRank: dynamics from multi-view single-cell data
dependent packages 4total releases 32latest release November 27, 2023most recent commit 4 months agopypi cellrank} Downloads
Hail ⭐ 905
Cloud-native genomic dataframes and batch computing
dependent packages 17total releases 146latest release October 30, 2023most recent commit 3 months agopypi hail} Downloads
Platypus ⭐ 524
A Free and Open Source Python Library for Multiobjective Optimization
dependent packages 15total releases 6latest release November 04, 2022most recent commit 3 months agopypi Platypus-Opt} Downloads
Intermine ⭐ 228
A powerful open source data warehouse system
dependent packages 2total releases 8latest release August 26, 2022most recent commit 2 years ago
Cutevariant ⭐ 85
A standalone and free application to explore genetics variations from VCF file
total releases 40latest release June 30, 2022most recent commit 8 months ago
Lineage ⭐ 114
tools for genetic genealogy and the analysis of consumer DNA test results
total releases 38latest release June 07, 2022most recent commit a year ago
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