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The Top 23 Gene Ontology Open Source Projects

Open source projects categorized as Gene Ontology
Categories > Gene Ontology
Goatools ⭐ 673
Python library to handle Gene Ontology (GO) terms
dependent packages 30total releases 47most recent commit 7 months agopypi goatools} Downloads
Go Ontology ⭐ 200
Source ontology files for the Gene Ontology
most recent commit 5 months ago
Deepfri ⭐ 156
Deep functional residue identification
most recent commit a year ago
Biolink Model ⭐ 149
Schema and generated objects for biolink data model and upper ontology
dependent packages 1total releases 6most recent commit 5 months agopypi BiolinkMG} Downloads
Uberon ⭐ 126
An ontology of gross anatomy covering metazoa. Works in concert with https://github.com/obophenotype/cell-ontology
most recent commit 5 months ago
Ontobio ⭐ 114
python library for working with ontologies and ontology associations
dependent packages 2total releases 190most recent commit 5 months agopypi ontobio} Downloads
Bio4j ⭐ 112
Bio4j abstract model and general entry point to the project
most recent commit 8 years ago
Ontoprotein ⭐ 98
Code and datasets for the ICLR2022 paper "OntoProtein: Protein Pretraining With Gene Ontology Embedding"
most recent commit a year ago
Ontology Access Kit ⭐ 89
Ontology Access Kit: A python library and command line application for working with ontologies
most recent commit 5 months ago
Goenrich ⭐ 68
GO enrichment with python -- pandas meets networkx
dependent packages 3total releases 27most recent commit 4 years agopypi goenrich} Downloads
Obographs ⭐ 58
Basic and Advanced OBO Graphs: specification and reference implementation
dependent packages 2total releases 12most recent commit 7 months ago
Gosemsim ⭐ 52
⛳ GO-terms Semantic Similarity Measures
most recent commit 5 months ago
Deepgo ⭐ 45
Function prediction using a deep ontology-aware classifier
most recent commit 3 years ago
Go Site ⭐ 41
A collection of metadata, tools, and files associated with the Gene Ontology public web presence.
most recent commit 5 months ago
Noctua ⭐ 33
Graph-based modeling environment for biology, including prototype editor and services
dependent packages 3total releases 1most recent commit a year agonpm noctua} Downloads
Go Annotation ⭐ 29
This repository hosts the tracker for issues pertaining to GO annotations.
most recent commit 5 months ago
Amigo ⭐ 28
AmiGO is the public interface for the Gene Ontology.
dependent packages 7total releases 12most recent commit 5 months agonpm amigo2} Downloads
Protege Tutorial ⭐ 28
Material for GO OWL/Protege Tutorial
most recent commit 7 years ago
Sig Bio Shiny ⭐ 25
An interactive application suite/interface for doing Exploration and Significant Biology on a set of Genes.
most recent commit 4 years ago
Boomer ⭐ 24
Bayesian OWL ontology merging
most recent commit 5 months ago
Go_enrichment ⭐ 23
Transcripts annotation and GO enrichment Fisher tests
most recent commit a year ago
Genescf_inactive ⭐ 20
GeneSCF moved to a dedicated GitHub page, https://github.com/genescf/GeneSCF
most recent commit 4 years ago
Msigdf ⭐ 18
Molecular Signatures Database (MSigDB) in a data frame
most recent commit 3 years ago
The 8 Most Depended On Gene Ontology Open Source Projects
Goatools ⭐ 673
Python library to handle Gene Ontology (GO) terms
dependent packages 30total releases 47latest release November 04, 2023most recent commit 7 months agopypi goatools} Downloads
Amigo ⭐ 28
AmiGO is the public interface for the Gene Ontology.
dependent packages 7total releases 12latest release November 14, 2015most recent commit 5 months agonpm amigo2} Downloads
Goenrich ⭐ 68
GO enrichment with python -- pandas meets networkx
dependent packages 3total releases 27latest release July 15, 2020most recent commit 4 years agopypi goenrich} Downloads
Noctua ⭐ 33
Graph-based modeling environment for biology, including prototype editor and services
dependent packages 3total releases 1latest release May 22, 2015most recent commit a year agonpm noctua} Downloads
Obographs ⭐ 58
Basic and Advanced OBO Graphs: specification and reference implementation
dependent packages 2total releases 12latest release February 26, 2020most recent commit 7 months ago
Ontobio ⭐ 114
python library for working with ontologies and ontology associations
dependent packages 2total releases 190latest release December 01, 2023most recent commit 5 months agopypi ontobio} Downloads
React Ontology Ribbon ⭐ 6
A React component for generating a heatmap type display for GO slims.
dependent packages 2total releases 9latest release September 23, 2021most recent commit 3 years agonpm @flybase/react-ontology-ribbon} Downloads
Biolink Model ⭐ 149
Schema and generated objects for biolink data model and upper ontology
dependent packages 1total releases 6latest release December 05, 2018most recent commit 5 months agopypi BiolinkMG} Downloads
The 9 Latest Releases In Gene Ontology Open Source Projects
Ontobio ⭐ 114
python library for working with ontologies and ontology associations
dependent packages 2total releases 190latest release December 01, 2023most recent commit 5 months agopypi ontobio} Downloads
Goatools ⭐ 673
Python library to handle Gene Ontology (GO) terms
dependent packages 30total releases 47latest release November 04, 2023most recent commit 7 months agopypi goatools} Downloads
React Ontology Ribbon ⭐ 6
A React component for generating a heatmap type display for GO slims.
dependent packages 2total releases 9latest release September 23, 2021most recent commit 3 years agonpm @flybase/react-ontology-ribbon} Downloads
Goenrich ⭐ 68
GO enrichment with python -- pandas meets networkx
dependent packages 3total releases 27latest release July 15, 2020most recent commit 4 years agopypi goenrich} Downloads
Obographs ⭐ 58
Basic and Advanced OBO Graphs: specification and reference implementation
dependent packages 2total releases 12latest release February 26, 2020most recent commit 7 months ago
Biolink Model ⭐ 149
Schema and generated objects for biolink data model and upper ontology
dependent packages 1total releases 6latest release December 05, 2018most recent commit 5 months agopypi BiolinkMG} Downloads
Amigo ⭐ 28
AmiGO is the public interface for the Gene Ontology.
dependent packages 7total releases 12latest release November 14, 2015most recent commit 5 months agonpm amigo2} Downloads
Noctua ⭐ 33
Graph-based modeling environment for biology, including prototype editor and services
dependent packages 3total releases 1latest release May 22, 2015most recent commit a year agonpm noctua} Downloads
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