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The Top 14 R Rna Seq Gene Expression Open Source Projects

Open source projects categorized as R Rna Seq Gene Expression
Categories > Gene Expression
Categories > Rna Seq
Nichenetr ⭐ 416
NicheNet: predict active ligand-target links between interacting cells
most recent commit 3 months ago
Powsimr ⭐ 102
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
most recent commit 9 months ago
Epic ⭐ 68
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
most recent commit 9 months ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Dgca ⭐ 38
Differential Gene Correlation Analysis
most recent commit 7 months ago
Grein ⭐ 30
GREIN : GEO RNA-seq Experiments Interactive Navigator
most recent commit 5 years ago
Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24
This tutorial is created for educational purpose
most recent commit 4 months ago
Microscope ⭐ 17
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
most recent commit 7 years ago
Circompara ⭐ 12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
most recent commit 4 years ago
Npdr ⭐ 12
NPDR: Nearest-neighbor Projected-Distance Regression with the generalized linear model
most recent commit a year ago
Archive Ruvseq ⭐ 11
Archived version of RUVSeq
most recent commit 7 years ago
Pyreqtl ⭐ 9
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
total releases 2most recent commit 4 years ago
Knowseq ⭐ 6
KnowSeq R package
most recent commit 2 years ago
Tag Seq ⭐ 6
3’ Tag RNA-seq pipeline (Work in progress)
most recent commit 3 years ago
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