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The Top 23 R Gene Expression Open Source Projects

Open source projects categorized as R Gene Expression
Categories > Gene Expression
Nichenetr ⭐ 416
NicheNet: predict active ligand-target links between interacting cells
most recent commit 4 months ago
Clustergvis ⭐ 114
One-step to Cluster and Visualize Gene Expression Matrix
most recent commit 8 months ago
Dorothea ⭐ 105
R package to access DoRothEA's regulons
most recent commit a year ago
Powsimr ⭐ 102
Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.
most recent commit 9 months ago
Basics ⭐ 81
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
most recent commit 5 months ago
Genetonic ⭐ 74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
most recent commit 4 months ago
Epic ⭐ 68
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
most recent commit 10 months ago
Irap ⭐ 58
integrated RNA-seq Analysis Pipeline
most recent commit 5 years ago
Dgca ⭐ 38
Differential Gene Correlation Analysis
most recent commit 8 months ago
Shinygeo ⭐ 35
Gene Expression Omnibus Analysis with Shiny 🔬
most recent commit 2 years ago
Mytai ⭐ 33
Evolutionary Transcriptomics with R
total releases 15most recent commit 7 months ago
Meringue ⭐ 33
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
most recent commit 2 years ago
Psichomics ⭐ 33
Interactive R package to quantify, analyse and visualise alternative splicing
most recent commit 4 months ago
Grein ⭐ 30
GREIN : GEO RNA-seq Experiments Interactive Navigator
most recent commit 5 years ago
Ouija ⭐ 29
Descriptive probabilistic marker gene approach to single-cell pseudotime inference
most recent commit 4 years ago
Clonealign ⭐ 25
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
most recent commit 3 years ago
Rna Seq Tutorial For Gene Differential Expression Analysis ⭐ 24
This tutorial is created for educational purpose
most recent commit 5 months ago
Mixrf ⭐ 23
A random-forest-based approach for imputing clustered incomplete data
total releases 1most recent commit 7 years ago
Microscope ⭐ 17
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
most recent commit 7 years ago
Neuroexpresso ⭐ 16
📊 Gene expression in neuroexpresso database
most recent commit a year ago
Graphsim ⭐ 16
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
most recent commit 2 years ago
Immucc ⭐ 15
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
most recent commit 3 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2most recent commit 2 years ago
The 5 Latest Releases In R Gene Expression Open Source Projects
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 6latest release October 08, 2022most recent commit 2 years ago
Glmmseq ⭐ 15
Gene-level general linear mixed model
total releases 2latest release March 30, 2021most recent commit 2 years ago
Mytai ⭐ 33
Evolutionary Transcriptomics with R
total releases 15latest release February 24, 2021most recent commit 7 months ago
Mixrf ⭐ 23
A random-forest-based approach for imputing clustered incomplete data
total releases 1latest release April 06, 2016most recent commit 7 years ago
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